Pan troglodytes (chimpanzee): 465017
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Entry
465017 CDS
T01005
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
ptr
Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
465017 (FOCAD)
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
465017 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
465017
NCBI-ProteinID:
XP_001151442
Ensembl:
ENSPTRG00000020809
VGNC:
4738
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All DBs
Position
11:complement(94913955..95227105)
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AA seq
1914 aa
AA seq
DB search
MKGTATFFRIRYLFHSLWKSSGPLSEEIPGLLCKYFCNHYLFIYLFRWNLALLPRLKCSG
TILAHCNLCLLDSSDSRASASQVDGNTDHQGNFHPHRLAVENEAAHIHVREAKMSDDIRK
RFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQTPALNLLWEKCCSDNVVVRTACC
EGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMHLLQMQALKEGQGGEKNIQNI
YTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQ
LQEYAKLRLALLKVLLQPQVLCDKDQPSMLEQQILQLCCDIVPCLQIKDLIQTTEAMMFI
EEVCLSLLRHPVFWKIQLTQMSLQLLCVSEVSLKITGECSSSIHLLEHSVELLKEDFPVE
LVIIGIALLLLQTPASQQKPILNLALKLLSVTEDQKIPKSSLLLVMPILQILSSSALEDC
ISVDEEGPSRQQLALNLLEMIQQECYRDDHQKLSYKLVCPVTSMYGTIFTAWRILEVMTD
SSAASDWLASVESLLPITAVIPAPAFLLLAHLLVEDKGQNLHQILKVTTELAQADSSQVP
NLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRIIQLLGTTPRLRAVTLRLL
TSLWEKQDRVYPELQRFMAVSDVSSLSVGKEVQWEKLIAKAASIRDICKQRPYQHGADML
AAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTL
SELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPIVANAAYRSLANFSAGEHTILHL
PEKIRPEIPIPEELDDDEDVEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMV
NMPRGIYHSALKGGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQ
SKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQG
RLGELELQLKHGKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNALLALSSL
AVVVSRHEASLSSDSDGLLEVQPNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLLSWFYYK
SYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQI
HMGLALGMFLSRLCEEKLSDISGQEMNLLLMKSLDALENCCFDTSLEYNTGCILGVGLVL
SLMSHSSQMQSRVHVAALLRKLSAHLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAT
EAEDVMNKLRLLVENSQQTSGFALALGNIVHGLSVCGHGKAEDLGSKLLPAWIRIVLTEG
TPTMLCLAALHGMVALVGSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGVIGLQ
SNAVWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVPPSLL
EVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLG
LWVTPPLIHSLSLNTKRYLLISAPLWIKHISDEQILGFVENLMVAVFKAASPLGSPELCP
SALQGLSQAMKLPSPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCLLEMTDDD
ANRIAQVTKSNMEKAAFVKLYLVSQGRFPLVNLTDMLSVAVQHREKEVLAWMILHSLYQA
RIVSHANTGVLKRMEWLLELMGYIRNVAYQSTSFHNTALDEALDFFLLIFATAVVAWADH
TAPLLLGLSASWLPWHQENGPAGPVPSFLGRSPMHRVTLQEVLTLLPNSMALLLQKEPWK
EQTQKFIDWLFSIMESPKEALSAKSRDLLKATLLSLRVLPEFKKKAVWTRAYGW
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtactgcaacctttttcaggattaggtatctcttccattctttatggaaaagc
tctggaccattatctgaggaaattcctggtctcctttgcaagtacttttgcaatcactat
ttatttatttatttatttagatggaatcttgctctgttgcccaggctgaagtgcagtggc
acgatcttggctcactgcaacctctgcctcctggattcaagtgattctcgtgcctcggcc
tcccaagtagatgggaatacagaccatcaaggaaatttccatccacacagattagcagtt
gaaaatgaagctgcacacatacatgtaagagaagcaaaaatgtcagatgatatcaggaaa
aggtttgaatttccaaattctcttatccaatcacaggctgtgggtcatcttattgctgca
gtcctaaaggaaaatggtttttcagaaaagattcaccaatctacaaatcagactcctgct
ttgaacttgctgtgggagaagtgttgcagtgacaatgtagtggttcgaacagcctgctgt
gaaggtctggtggcactcgttgctcaggatcatgcagagttcagctatgttctcaatggg
atactcaacttgattccatcaaccagaaatacacatggcttgataaaagccattatgcac
ttactacaaatgcaagctcttaaggaaggacaaggtggggaaaagaatattcagaatata
tataccattagaaatcatcctcatcctttgatcactgtgcttgaacacagacctgattgc
tggccagtgtttttgcagcagctgacagcgtttttccagcagtgccctgaaaggtcagaa
gtttcatgcattcaaataatggcaccatttctgtggtatctgtattgtgaaccatctcag
ttacaagaatatgctaaactccgactagccctgctgaaagtcttacttcaaccccaggtt
ctttgtgacaaagatcaaccatcaatgctggaacagcagatacttcaactgtgttgtgac
atagttccatgtttgcagataaaagatttgatacagacaacagaggcgatgatgtttatt
gaggaagtatgtttaagccttttgcgtcatcctgttttctggaaaattcagcttacccag
atgagtcttcagctgctgtgtgtcagtgaagtcagcttaaagataactggtgaatgttca
tcttcaattcaccttttagagcacagtgttgaacttctgaaggaggattttcctgttgaa
ctggtcataattggaatagctttactacttctacagactccagcaagtcagcagaagcca
atcttaaatctagctttgaagctcctctctgttactgaggatcagaaaatcccaaagtcc
tctctgctgctagtgatgccaattctgcagatactatcttcttctgccttggaagactgt
atatctgtggatgaagaaggtccctctaggcagcagttggctctaaaccttttggaaatg
atacagcaggaatgttacagagatgaccaccaaaagctctcctacaagcttgtgtgccct
gtaaccagtatgtatggtacaatatttacagcctggaggattcttgaagtaatgacagac
tcgtctgctgcaagtgactggttggcttcagtagagtcattgcttcctattactgctgtg
atccctgcgcctgcctttcttctgctggctcacctccttgttgaagacaaaggacaaaat
cttcaccaaatactcaaggtcactacagaattagcccaagcagattcctcccaggtgcca
aatctgattccagttttgatgttcaaattgggaagaccactggaacctatattatataat
gatatattgtatactttacctaagcttggtgttcacaaggtgtgtataggacaaattcta
cgaataatacaactacttggaaccacaccacgactaagagctgtcactttgcgcttgctg
acatctttgtgggaaaagcaggaccgagtctatcctgaactgcagcgtttcatggctgtg
tctgatgtatcttctctttcggtgggcaaggaagtccaatgggagaaactgattgcaaaa
gcagcatcaatcagagatatatgtaagcagaggccgtatcaacatggtgcagatatgttg
gcagctatttctcaagtgttgaatgaatgcaccaagcctgatcaagctactccagcagcc
ttggtattacagggtcttcatgcactctgtcaagctgaggttgtttgcattcgctccact
tggaatgctctctctccaaagctgagttgtgacacaagacctctcattctgaagacactg
agtgaactattttctctagttccttccttaacggtcaatacaactgaatatgagaatttt
aaagttcaagtcctcagcttcctctggactcatactcaaaacaaggacccaattgtagca
aatgctgcatatagatccctggccaactttagtgcaggagaacacaccattcttcatctg
cctgaaaagataagaccagaaattcccattcctgaagaattagatgacgatgaagatgtt
gaggatgtggatctttcagttcctggctcttgctatctcaaactgttgtcactcactccc
cctttggttttaccagctttggaggaattttttacatcacttgtgaagcaagaaatggtg
aatatgcctcgtgggatatatcactctgcattaaaaggaggtgcccgctcagaccaagga
aagactgtagcaggaatccccaattttatattgaaaatgtatgaaacaaacaagcaacca
ggactgaaacctggccttgcaggtggtatgttattttgctatgatgtttccatgtatcag
agtaaagatggaaaaccattgaacagactgatggccagcagagggcgaagtttcaagcag
acttcacttgctcttgtacatgaggttcatatccagctttcagagtggcaccgtgcgatt
tttcttccgcaggcctggcttgcatacatgaatcgagcttatcatgccattttacaggga
agactaggagagctggagttgcagttaaaacatggaaaagaagaacctgaggaggtgcag
tacaaaaaaagcacagcctggctctgggttagagacatgctgactgatgagatcaccaag
gcagctgcaaaggagagtccggtagtgaaaggcaatgcgctgttagctctaagcagcctt
gctgtcgtcgtatctagacatgaagccagcctctcctcagactctgacgggctcctggag
gttcaacctaatttcctttcaatgaaagagtgggtttccatggtacttgatacactcttg
gtcattgtggatagccattaccaaccccgagggcaacttctctcctggttttattataag
tcctattctggtgaaaacacagctagtgccattgcccgttctgctgccgccacggctttg
tctctccttgtgccagttttcattatctcttgcaaagagaaggttgaggaaatcctgaac
atgctgactgccaggttacctgggaaaccaagtgctgatgagtctcaagccgtgcaaatc
cacatgggccttgctttagggatgtttctctctcgcttgtgtgaagagaaactcagtgat
atatctggccaagagatgaaccttcttctgatgaagtcgttggatgccctggaaaattgc
tgctttgacactagtcttgaatacaacacgggctgtatattgggagttggacttgttctg
tccctcatgagccacagcagccaaatgcagtcccgcgttcacgtagcggcattgctccgg
aagctgtctgcgcacctagatgacagcgggagccagagcagaacgtttcaggaggtcctt
gcctacacacttagctgtgtatgtacatcagcgttcagtgctggaattattgaggctaca
gaggctgaggatgttatgaacaagcttcgactgttagtggagaatagccagcagacttca
ggttttgccctggctttaggaaacatagttcatggattgtctgtgtgtggacatggaaaa
gctgaagacttgggcagcaaactactccctgcctggatcagaattgttctaacagagggc
actcccacaatgctttgtctggcagctcttcatggcatggtggccttggtaggctctgaa
ggggatgtaatgcagctgaaatcagaagccatccagacctctcattttcaaggcagactt
aatgaagtcattagaaccttaactcaggtcattagtgtctctggggtgattggtctccag
tcaaatgcagtctggcttcttggacatcttcatctatctactctatcctcaagtcaaagt
agagcctctgttcctactgactatagctatttgcctgaaagcagttttattggagcagct
attggctttttcattacaggaggaaaaaaaggtcctgaatctgtgcctccttcccttctt
gaagtagtgatgaaacccatagcaactgttggagaaagctaccaatatcctcctgtgaac
tgggctgcacttctctctccacttatgaggctaaattttggtgaagagatccagcaactg
tgccttgaaattatggtgacccaggcacagtcatcccagaatgcagctgcactattgggc
ttgtgggtgacaccaccactgatccacagtctgagtctgaataccaagagatatctcctg
atatctgcacctctgtggataaaacacatctctgatgaacagatcctgggttttgttgaa
aatttaatggtggcagtttttaaagcagcttccccacttggaagtcctgagctatgccca
agtgctttacagggtctgagccaggccatgaaactgcccagccctgcccaccacctctgg
agtctgctctctgaagctactgggaaaatttttgacctcctgccaaataagattcggaga
aaggatctagagctgtatatcagcatagcaaaatgcctcttagaaatgacagatgatgat
gccaatcggatcgcccaggttactaagagcaacatggaaaaagctgcctttgtcaaactg
tacttagtctctcaaggacgattccccttggtgaacctgaccgatatgctgagcgttgct
gtgcagcaccgtgagaaagaggtgttggcctggatgattctgcacagcttataccaggca
cggattgtgagccatgccaatacgggcgttttgaagagaatggagtggctcttggaactg
atgggttatattagaaatgttgcttaccagtcaacatcctttcacaatacggctcttgac
gaggctttggacttcttcttgctgatatttgcaaccgcagtggttgcatgggccgaccac
actgcccctctcctcctcggtctcagtgccagttggttgccatggcatcaggagaatggc
ccggctgggccagtaccaagcttccttggcaggagtccaatgcacagggtcactctgcag
gaggttctcactctccttcccaatagcatggctctgctgctgcaaaaagagccatggaag
gaacagacccagaagttcattgactggctattcagcatcatggaaagccctaaagaagcc
ctctcagcaaagtccagggatcttttgaaagccaccctgctgtccttgagagttctccca
gagtttaagaagaaagctgtatggaccagagcatatggttggtga
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