Puccinia triticina (wheat leaf rust): PtA15_8A564
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Entry
PtA15_8A564 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K11600
exosome complex component RRP41
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_8A564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_8A564
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PtA15_8A564
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PtA15_8A564
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6417
Motif
Other DBs
NCBI-GeneID:
77812901
NCBI-ProteinID:
XP_053023213
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All DBs
Position
8A:join(5336040..5336042,5336142..5336601,5336682..5337097)
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AA seq
292 aa
AA seq
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MSRVELLSSGGLRLDNRRPYELRSIDFSLLPNPPVGCDSVAKVEHGLTKLIGFVSGPRDS
VDSNRTVATALGNPAGNSVSSNLNNKSNDQNGQISVHISTTPFSSIDRKKIARSDKKFAD
FAQAIQNSFEPVVMLNLYPRSTIDIYIQVLQQDGALLQAAINVTTLALIGAGVSITDYLL
SVSVGALSTPSCPLLDLTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILTFESLLEIG
LEACLVLQLEMDREVRRWATLLNSSIHNSLDYKSHSAQGPVANQNPQIMMID
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgagtggagttgctgtcttcaggtggtcttcgattggacaaccgaaggccatac
gagctgcggtcgatcgatttcagtcttctacccaacccacccgttggatgcgactcggtg
gcaaaggtcgagcatggcctgacgaaactgataggattcgtatctggcccgagagattcg
gtcgactccaaccggaccgtcgcgaccgctctcggcaatccagccggaaactcagtatcc
tctaatcttaataataaaagtaatgaccagaatggtcagatctccgtacatatctcaaca
acccctttcagttcaatcgatcgcaagaaaatcgctagatccgacaagaaattcgccgat
ttcgctcaagctattcaaaactcttttgaacctgtcgtcatgctaaacctttaccctaga
agcacaatcgatatctacattcaagttcttcaacaggatggagctctccttcaggcagcc
atcaatgtcactaccttagccctcattggtgccggtgtatccatcaccgattacttgctc
tcagtatccgttggagcactctcgacgccctcttgcccgctcttggatctaacaaacagt
gaacagacggatctaccaaacctgacgattgctgttctaccgcggactcagaaactcact
cttcttcaattagatacacggatcaatatccttacattcgaatcccttttagaaatcggg
cttgaggcttgtctggttcttcaactcgaaatggatcgagaggttcgacgatgggctact
ttactcaactcttcaattcataactcgcttgactataaatctcactctgcccaaggccct
gttgcaaatcaaaatccgcaaatcatgatgatagattga
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