Pseudomonas tremae: I9H09_21950
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Entry
I9H09_21950 CDS
T08237
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I9H09_21950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptre03019
]
I9H09_21950
Enzymes [BR:
ptre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I9H09_21950
Messenger RNA biogenesis [BR:
ptre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I9H09_21950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQB36152
LinkDB
All DBs
Position
4893919..4895808
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRD
KGKDKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPATPRPASDRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAPATGGAARPANSGRPAGGAPRTGSATG
APKRNGSGSSAPRSRDSQPRGRRPAREDQPLPREGQEPAVRAPRDGQPQPKIVHKESKID
RFPSAEQLDQLPARPRGEKPALLTRNRDS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tatacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcgcagacaggtactggtaaaaccggtggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccgactcgcgaactcgccgcgcaagtgcatgaaagcttcaag
ctctatgcacgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtaggcatgaac
ccgcaggttcaggccatgtcccgcggtgtggatgtactggtagcctgccctggccgcctg
ctcgacctcgccggtcaaggcagcgttgatctgtcccacgtcgaaatcctggtgcttgat
gaagcagaccggatgctcgacatgggcttcgtacatgacgtcaaaaaggtcttggctcgt
ctgccggccaagcgtcagaacctgctgttctcggcgacgttctccaatgacatcacgtca
ttggcaggcaagctgctgcacaaccccgagcgcatcgaagtaacgcctccgaataccacg
gtcgagcgtatcgagcagcgggtgttccgtcttgcggccaaccacaagcgttcgttgctg
gcgcacttgatcaccgtgggggcctgggaacaggtgctgatcttcacgcgtaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggccttgccgccgtcgctatccac
ggcaacaagagccagaacgcacgcaccaaggctctggccgacttcaaggccggtgatgtg
cgcatcatggtcgcgaccgacatcgccgcacgcggcctggatatcgatcagctgccacac
gtcgtcaacttcgaattgccgaatgtcgacgaagattacgtacaccgcatcggccgtacc
ggtcgtgcaggtcgctcgggcgaagccatttctctggttgcaccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaaaatcccggatggcgacctgatgggcttc
gacatcacggcagtcgaggctgaaaagccggaagtacgtgagcgtccggatgttcgcaat
tcccgtggtgcgcgccctgctcgtgccgatggcgacaagaacaacggcggtcgtcgcgac
aagggcaaggacaaaggcaaggaaaaacctgccgctgctgccgccactggcgaacgtcct
gcaaggcagccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgca
tcgcaaccagccacaccgcgcccggcatcggatcgcgccccggacgagttccgcgatgac
gaagtagataacttcggtaatcgcgctgactacgtgagcccttatcagggcaaaggccag
aaccgcggtcgtcgccctgctgccgcgcctggcgcagcaccggcaaccggtggcgctgca
cgcccggccaattcgggccgccctgcgggtggcgcaccacgtaccggttccgctactggc
gcacccaagcgtaacggctcgggttcttcggcaccgcgctcgcgcgatagtcagccacgc
ggtcgtcgcccggcacgtgaagatcaacccttgccacgtgaaggccaggagcctgctgta
cgcgccccgcgcgacggtcagcctcagccgaagatcgtgcacaaggaatcaaagatcgac
cgcttcccgtctgccgagcaactggaccaattgccagcacgcccacgcggtgaaaaaccg
gccctgctgacccgcaaccgcgacagctga
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