Paraburkholderia tropica: G5S35_13455
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Entry
G5S35_13455 CDS
T07044
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ptro
Paraburkholderia tropica
Pathway
ptro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S35_13455 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptro03021
]
G5S35_13455 (rpoB)
03400 DNA repair and recombination proteins [BR:
ptro03400
]
G5S35_13455 (rpoB)
Enzymes [BR:
ptro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S35_13455 (rpoB)
Transcription machinery [BR:
ptro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S35_13455 (rpoB)
DNA repair and recombination proteins [BR:
ptro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S35_13455 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
UbiD
Motif
Other DBs
NCBI-ProteinID:
QNB12488
LinkDB
All DBs
Position
A:complement(2973657..2977763)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQAETASAQRKSEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE
GAQMEFVPERLRGEVARFDISDREGKVIVQKDKRINAKHIRDLESAKTTYISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEITEGVLDKLREAKIKDIQTLYTNDLDQGPYISSTLRID
ETADKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVADDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DWVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLEGKVANGGPKKLAKGTKIDQAYLSDLDHYHWFDIR
LADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLARQTKIAELREFLTKIYNESGHKEDLDSFSDDEIFELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAYPDDIAANLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaaacgccccatc
gttcaccaagttcctttcctgctggctacccagcttgaatcattcagcacgttcctgcaa
gcagaaacggcgagcgcacagcgcaagtcggaaggtctgcaagcagcgttttcgtctgtt
tttcctattgtttcccataacggctttgctcgtctagagttcgtcagctacatgctgtcg
ccgccggcattcaacatcaaggaatgccagcagcgcggtctgacgtactgctcggcgctg
cgcgccaaggtacgtctcgttctgctcgacaaggaatcgccgagcaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgaccggttcg
ttcgtcatcaacggcaccgagcgtgtgatcgtctcgcagctgcaccgttcgcctggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaaactgctgttctccgctcgt
atcattccttaccgtggttcgtggctcgatttcgagttcgacccgaaggacgtgctgtac
ttccgtgtcgaccgccgccgcaagatgccggtcacgatcctgctgaaggccatcggcctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcacgctgatgccggaa
ggcgcgcagatggagttcgtgccggagcgtctgcgtggtgaagtcgcgcgcttcgacatt
tcggatcgcgaaggcaaggtcatcgtccagaaggacaagcgcatcaacgcgaagcacatt
cgcgacctcgaaagcgccaagaccacctacatttcggtccccgaagactatctgctcggc
cgcgttctggcgaagaacgtcgtcgacggcgacacgggcgaagtgatcgcgaacgcgaac
gacgaaatcaccgaaggtgtgctcgacaagctgcgcgaagcgaagatcaaggacatccag
acgctctacacgaacgatctggatcagggtccgtacatctcgtcgacgctgcgtatcgac
gaaaccgccgacaagacggccgcgcgtatcgcgatctaccgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggccctgttcaaccgcctgttctacagcgaagaagcg
tacgacctctcgaaggtgggtcgtatgaagttcaaccgccgcgtgggccgtgacgaaatc
gtcggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgacatcgaccacttgggcaaccgtcgcgtgcgt
tgcgtcggcgaactggccgaaaaccagttccgcgccggtctcgtgcgtgtcgaacgtgca
gtcaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacccacaagcgccgcgtgtcggcacttggc
ccgggcggtctgacgcgcgagcgcgctggctttgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgtccgattgagacgccggaaggtccgaacattggtctgatcaactcg
ctcgctctgtatgcgcacctgaacgaatacggcttcctcgaaacgccgtatcgcaaggtc
gtggacagcaaggtgaccgaccagatcgactacctgtcggcaatcgaagaaggccgttac
gtgatcgctcaggcgaacgcggcagtggccgacgacggcacgctgaccgacgaactcgtc
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtctcggtggctgcttcgctgattccgttcctcgagcacgac
gacgcgaaccgcgcactgatgggttcgaacatgcagcgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtcggtacgggtatcgagcgtacggttgcggtcgactcgggtacg
acggttcaggcgctgcgtggcggcgtggtggattacgtcgacgcgggccgtatcgtgatt
cgcgtgaacgacgatgaagccgtcgccggtgaagtcggcgtggacatttacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaagatgggc
gactgggtgtcgcgtggcgacgtgctggctgacggcgcgtcgaccgatctgggcgagctc
gcgctcggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaagac
tcgattctgatctcggagaaggtggttgcggacgaccgttacacgtcgatccacatcgaa
gaactgaatgtcgttgcacgcgacacgaagctcggaccggaagaaatcacgcgcgacatt
tcgaacctcgcggaagtgcagcttggccgtctcgacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagcgggcgacgtgctcgtgggcaaggtcacgccgaagggcgaaacccag
ctcacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcttcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaggtgttc
acgcgcgaaggcatcacgcgcgacaagcgcgcgcaacagatcatcgacgatgaactgaag
cgttatcgcctcgacctgaacgaccagctgcgtatcgtggaaggcgacgcgttccagcgt
ctcgcgcgcatgctcgagggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggt
acgaagatcgatcaggcttacctgagcgacctcgaccactaccactggttcgacatccgc
ctcgcggacgaagaagcagcggcgcagctcgaagcgatcaagaactcgatcgaagaaaag
cgtcaccagttcgatctggcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgccgtcaagcgtcgtctgcag
cctggcgacaagatggcaggccgccacggtaacaagggtgtcgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggccgacgtcgtgctgaacccgctg
ggcgttccgtcgcggatgaacgtgggtcaggttctcgaagtgcacctcggttgggccgcg
aagggtctgggctggcgtattggcgaaatgcttgcgcgtcagaccaagattgcagagctg
cgtgagttcctcacgaagatctacaacgaatcgggccacaaggaagacctcgacagcttc
agcgacgacgaaatcttcgaactcgcgaagaacctgcgcgaaggcgtgccgttcgcaacg
ccggtgttcgacggtgcgaccgaagaggaaatgggcaagatgctcgatctggcttacccg
gacgacatcgccgcgaacctcggcatgacgccgtcgaagaaccaggtgcgtctgtacgac
ggccgcacgggcgagatgttcgagcgcaccgtgaccgtgggttacatgcactacctgaag
ctgcaccaccttgtcgacgacaagatgcacgcgcgttcgacgggtccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgaaatggaa
gtgtgggcgctcgaagcgtatggcgcttcgtacgtgctgcaagaaatgttgacggtgaag
tcggacgacgtgaacggccggacgaaggtgtacgaaaacctcgtcaagggcgaccacgtg
atcgatgcaggcatgccggaatccttcaatgtgctggtgaaggaaatccgttcgctcggt
atcgacatcgacctcgaccgcaactaa
DBGET
integrated database retrieval system
