Polynucleobacter tropicus: DCO17_02525
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Entry
DCO17_02525 CDS
T08318
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp00540
Lipopolysaccharide biosynthesis
ptrp01100
Metabolic pathways
ptrp01250
Biosynthesis of nucleotide sugars
Module
ptrp_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
DCO17_02525 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ptrp01005
]
DCO17_02525 (rfaD)
Enzymes [BR:
ptrp01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
DCO17_02525 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ptrp01005
]
Core region
DCO17_02525 (rfaD)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
KR
Motif
Other DBs
NCBI-ProteinID:
QKM64202
UniProt:
A0A6M9PWF3
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Position
482659..483678
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AA seq
339 aa
AA seq
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MTIIVTGAAGFIGANIVQALNVRGEKNIIAVDDLRPADKYRNLADLDIIDYLDKDEFLEA
FRSGRFGKVKAVFHEGACSDTMEADGIFMMANNYRYTMDLLDICTAKKVQLLYASSAATY
GGSDVFVESRENEKPLNIYGYSKFLFDQVMRKRFAENANTAQVVGFRYFNVYGPRESHKG
RMASVAFHQYHQYKANGHVKLFGEYGGYGPGEQSRDFVSVEDVVKVNLFFLDHPEISGIF
NLGSGRAQPFNDVAHAVANAMRKLDKAQPASLQELVKEKAIEYIPFPEALKGKYQCFTQA
DLTKLRAAGYSEPFLNVEQGVSRYIEWLEANSDFLANPL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtgactattatcgtaactggcgccgcaggatttattggcgcgaacatcgttcaggcttta
aatgtgcgtggcgagaaaaatattattgctgttgacgacttacgtccagccgataaatat
cgcaatctcgctgatctcgacattattgattaccttgataaagatgaatttctagaagca
tttagaagtggtcgctttggcaaggtaaaagcagtatttcatgagggcgcttgctccgat
acgatggaggccgacggtattttcatgatggcgaataactatcgctacaccatggattta
ctggatatctgtaccgctaaaaaggtgcagctcttgtatgcctcttctgctgccacttat
ggcggttccgatgtgtttgttgaaagccgtgagaatgagaagcctttgaatatttatggc
tactcaaagttcttatttgatcaggtaatgcgtaagcgttttgctgaaaatgcgaacact
gctcaggtagtgggctttcgctacttcaatgtatacggtccacgcgaatcgcataaaggc
cgtatggcatccgtagcatttcatcaataccatcaatacaaggcaaatggccacgtaaaa
ctatttggtgaatatggcggctatggaccaggcgagcaaagtcgcgactttgtatcggtt
gaagatgttgtcaaagtaaacctttttttcttagatcacccagagatcagcggaatcttc
aatttgggcagtggtcgcgcgcaaccatttaacgatgttgcgcatgctgttgctaacgcg
atgcgcaaattagataaagcgcaaccagcaagcttgcaagaactggttaaagaaaaagcg
attgagtacattccatttccggaagcactcaaaggcaagtaccaatgcttcacgcaggcc
gatttaacaaaattgcgcgctgctggatattcagagcctttcctcaatgttgaacagggc
gtcagccgttatatcgagtggctagaagccaattctgatttcttggcaaacccactgtaa
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