KEGG   Pyrenophora tritici-repentis: 6343173
Entry
6343173           CDS       T10215                                 
Symbol
PtrM4_119150
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ptrr  Pyrenophora tritici-repentis
Pathway
ptrr03018  RNA degradation
ptrr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptrr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    6343173 (PtrM4_119150)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    6343173 (PtrM4_119150)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptrr03019]
    6343173 (PtrM4_119150)
   03041 Spliceosome [BR:ptrr03041]
    6343173 (PtrM4_119150)
Messenger RNA biogenesis [BR:ptrr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     6343173 (PtrM4_119150)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     6343173 (PtrM4_119150)
Spliceosome [BR:ptrr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    6343173 (PtrM4_119150)
SSDB
Motif
Pfam: LSM DUF4023
Other DBs
NCBI-GeneID: 6343173
NCBI-ProteinID: XP_001935263
UniProt: B2W5N0
LinkDB
Position
6:1820207..1820886
AA seq 186 aa
MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYVRGSTIKYLRVPDE
IVDVVKEQQAKDQANRGGRGGGMHGRGDHRGDRGGGSIPIAATRHPAHPMHIHKPPEPCS
DVKVQAISRSKKAVIVDQPGAVRLHYMEYPYYRPYKLEMLWLLHVHAGEPSLVNCSLGTP
LAYTDA
NT seq 561 nt   +upstreamnt  +downstreamnt
atgctggttgaactgaagagcggcgaaacccttaacggactcttagtcaattgcgacaca
tggatgaacctcacactacgagaggttgtgcaaacgagcgccgacggtgacaagttcatg
aaactaccagagatctacgttcgtggaagtacaatcaagtaccttcgagtgccggacgaa
attgtcgacgtcgtaaaggaacaacaggccaaggaccaggcgaaccggggcggccgagga
ggtggcatgcatggacgcggagaccaccggggcgaccgcgggggaggctcaattcctatc
gctgctacgcggcatccggcacatccgatgcacatacacaaacctccggagccttgttca
gatgtcaaggtccaggcaatatcaaggagcaagaaagcagttattgtggaccaacccggc
gcggtccggctccactatatggaatacccctactatcgaccctacaagcttgagatgctt
tggttgctacatgtccatgctggagagccatctctcgtaaattgtagtcttggcacaccc
ttagcctacactgacgcgtag

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