Pyrenophora tritici-repentis: 6346143
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Entry
6346143 CDS
T10215
Symbol
PtrM4_137810
Name
(RefSeq) HolB, ATPase involved in DNA replication
KO
K10755
replication factor C subunit 2/4
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03030
DNA replication
ptrr03410
Base excision repair
ptrr03420
Nucleotide excision repair
ptrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
6346143 (PtrM4_137810)
03410 Base excision repair
6346143 (PtrM4_137810)
03420 Nucleotide excision repair
6346143 (PtrM4_137810)
03430 Mismatch repair
6346143 (PtrM4_137810)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrr03032
]
6346143 (PtrM4_137810)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6346143 (PtrM4_137810)
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6346143 (PtrM4_137810)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
6346143 (PtrM4_137810)
DNA Replication Termination Factors
ELG1-RFC complex
6346143 (PtrM4_137810)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
6346143 (PtrM4_137810)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
6346143 (PtrM4_137810)
Check point factors
HRAD17(Rad24)-RFC complex
6346143 (PtrM4_137810)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
RuvB_N
AAA_22
AAA_11
AAA_16
AAA_assoc_2
AAA_lid_RFC1
SLFN-g3_helicase
Mg_chelatase
AAA_28
AAA_7
DUF815
AAA_19
AAA_5
AAA_24
DEAD
ResIII
bpMoxR
AAA_14
AAA_3
RNA_helicase
RNA_helicase_helical
AAA_2
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6346143
NCBI-ProteinID:
XP_001938201
UniProt:
B2WD10
LinkDB
All DBs
Position
8:complement(858558..859864)
Genome browser
AA seq
417 aa
AA seq
DB search
MADFFNIKARQQAAAQASASKAPTTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQILSRT
MQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRQKVKD
FARQQLSVAPNYNIMVEDKSSGETKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRT
METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGV
AEELVRVADGDLRKAITFLQSAARLVGAVQAVNGGGAGASKKGKKKVVEEDEMDVDAPPT
STPAISLPIIAEIAGVLPPATLSTFSDSLFPKSAAAKQIRYNEIAKIVENMIAEGWSAQQ
TVGQLYEQIMFDERVEDVKKVRLAGVFSETDKRLVDGGDEHLAVLDLGVRVAGVLCL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttttcaacattaaggcacggcaacaagccgctgctcaagcaagtgcctca
aaagctcccacaacaaagcaagagcccaatcgcctgcaaccatgggtcgagaaataccgc
cccaagacgctctccgaagtcacagctcaagacaacacgatccaaattctctctcgcaca
atgcaatcctcgaacctaccccacatgctcttctacggccccccaggtaccggtaaaacc
tccaccattctcgccctcgccaaagaactttacggccccgaactcatgaagagccgagta
ctcgaactgaacgcttcagacgagcgcggaatcagcatcgtgcgtcaaaaagtaaaagac
tttgcgcgccaacagctcagcgtagccccaaactacaacatcatggttgaagacaagagc
agcggcgagacaaagacagtgcgttacagagataaatacccatgtccgccattcaaaatc
atcgtactggacgaggcagacagtatgacacaagatgcgcagagcgcgctccgcaggact
atggaaacgtacagtcgcatgacgagattctgtctcgtgtgcaactacgtaacccgtatt
atcgatcccctggcttctcgatgcagtaaattccggttcaagagcctggatcaaggaaac
gctatcaagcgtgtgagcgacattgcaaagttagagaatgtgagcctggaagacggggtc
gcagaagaactagtcagagtcgccgatggcgatttgagaaaggcaattaccttcttgcag
tccgcagccagactcgtcggcgctgtacaagccgtcaacggcggcggtgccggtgcctcc
aaaaagggcaagaagaaagtcgtcgaagaagacgaaatggacgtcgatgcacccccaact
tctacacccgccatctccctccccatcatcgcggaaatcgctggtgtcctcccgcccgcc
acgctctctactttttcagactcgctgtttcccaagtcggcagccgcgaaacagatcagg
tataatgagattgccaagattgtggagaatatgattgcagaggggtggagtgcgcagcag
actgtgggtcagttgtatgagcagattatgtttgatgagagggtcgaggacgtgaagaag
gttcggctggccggtgtctttagtgagacggataagaggttggtggatggtggggatgag
catttggctgtgttggatttgggggttagggttgctggggtattgtgtctctga
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