Pyrenophora tritici-repentis: 6346263
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Entry
6346263 CDS
T10215
Symbol
PtrM4_136540
Name
(RefSeq) U2 snRNP spliceosome subunit
KO
K12828
splicing factor 3B subunit 1
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6346263 (PtrM4_136540)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrr03041
]
6346263 (PtrM4_136540)
03036 Chromosome and associated proteins [BR:
ptrr03036
]
6346263 (PtrM4_136540)
Spliceosome [BR:
ptrr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
6346263 (PtrM4_136540)
Complex B
6346263 (PtrM4_136540)
Complex C
U2 SnRNP specific factors
6346263 (PtrM4_136540)
Chromosome and associated proteins [BR:
ptrr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
6346263 (PtrM4_136540)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IPO5
TPR_DNAAF5
HEAT_2
HEAT_MROH2B_C
HEAT_EF3_N
Htt_N-HEAT_1
Cnd1
Vac14_Fab1_bd
XMAP215_CLASP_TOG
mTOR_dom
UNC45-central
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
6346263
NCBI-ProteinID:
XP_001938318
UniProt:
B2WDC7
LinkDB
All DBs
Position
8:539380..542973
Genome browser
AA seq
1197 aa
AA seq
DB search
MAGPRAGKSRANGAANGDASNNKQSLAEASDKELYGGNTGDYVSSIAVDEADDDMEDVQL
NGRSLVGQYTASKEMMNEFAHGDAGEADILDSREKQAQIASRETDYQRRRFDRALSPSRA
DPFAEGGEGAGQSYKDVMKQREFEREEARVQRLIEEKEKSGGNQVLDHKATLKDGGSPPP
VDGDKTPPIKKTRKRRRWDEAADESETAAIKEDDNEGTKVESEPKKRSRWSPAVEETKAP
EAAAPARSRWDTTAVAPASAATPVPTANGAAVTHTFAFGTDISNRNAPLSDEQLDMMLPG
EAEGYKVLEAPPGYEPVRRPVGVVPQLPAGYQGFLLPEADNSLAAMGRQLPTEIPGVGDL
QFFKNEDMKYFGKLTDGADENEMTVEELKERKIMRLLLKVKNGTPPMRKTALRQLTDNAR
QFGAGALFNQILPLLMERTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLLID
QDYYARVEGREIISNLAKAAGLAHMISTMRPDLDHQDEYVRNTTARAFAVVASALGIPAL
LPFLRAVCRSKKSWHARHTGVKIVQQIPILMGCAILPHLKGLVECIGENLNDEQPKVRMV
TALALAALAEAASPYGIESFDDILNPLWTGARRQRGKALASFLKAVGYVIPLMDEEYSNY
YTSQIMEIVIREFQSPDEEMKKVVLKVVSQCSNTAGVTPVYLKDNVLPEFFKHFWVRRMA
LDKRNYRQVVDTTVDLAQKAGVAEIVGRIVSNMKDENEAYRKMTVETVDKVISTLGAHDV
DERLEEQLIDGVLVAFQDQTIEDPIVIDGFATVVNALGERTKTYLPQIVATVLARLNNKS
ATVRQQAADLISRITFVMQKCDEDPQLIKLAQALYEYLGEEYPEVLGSILGALRAIVTVV
GLHAMQPPIKDLLPRLTPILRNRHEKVQENTIDLVGRIADRGANYVNPREWMRICFELLD
MLKAHKKGIRRAANNTFGYIAKAIGPQDVLATLLGNLRVQERQSRVCTAVAIGIVAETCA
PFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMAKDYVYAITPLLEDALIDRDQVH
RQTAASVVKHVALGCVGLDCEDAMIHLLNLLWPNLFETSPHVIDRIIEAIEGVRNAVGTP
LVMNYVWAGLFHPARKVRQPYWRIYNDAYVQNADAMVPAFPAFDEPEVRRHELDIFI
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggccgggccgcgcgcaggaaagtccagggccaacggcgctgccaatggggacgcgtcc
aataacaaacaatcgcttgcagaggcaagtgataaggaactctatggcggcaacaccggc
gactacgtgagctccatcgccgtcgacgaagcagacgacgacatggaggatgtccagctg
aacggccgaagcctagtaggtcaatacaccgcgtcaaaggaaatgatgaacgagtttgca
cacggagatgctggtgaggccgacatcctcgacagtcgcgagaagcaagcgcagatcgcg
tcgcgcgaaactgactaccaacgtcgccgattcgatcgcgcactctcgccctcgcgagcc
gaccccttcgcggaaggcggcgaaggtgctggccagtcctacaaagacgtcatgaaacag
cgcgaatttgagcgtgaggaagctcgtgttcagcgtcttatagaagagaaggaaaagtcg
gggggcaatcaagttctagaccacaaggccacgctcaaggacggcggctcaccacctccc
gtcgacggcgataagaccccgcccattaagaagactcgcaagaggagacgctgggacgag
gctgccgacgagagtgaaacagcggcgatcaaggaagacgacaatgagggcaccaaagtc
gagtccgagccgaagaagcgttcacgatggtcaccggcagtcgaggaaaccaaagctccc
gaagctgccgcaccagcacgatcacgctgggataccactgcggtagccccagccagcgct
gctacgcccgttcccacagcaaatggggctgccgtcacccacacgttcgcattcggcacc
gacatctccaatcgcaacgcacccctttccgacgagcagctggacatgatgcttcctggt
gaagctgaaggctacaaggtcctcgaggcacctcccggctatgagccagtacgacgacca
gtcggtgtagtaccccaacttccggcgggataccagggtttcctgctaccagaggctgac
aacagcttggccgccatgggcaggcagctgccaacagaaatccccggtgtgggcgacttg
cagttcttcaagaatgaggacatgaagtactttggaaagctcactgacggcgccgatgag
aacgagatgactgtggaggaactcaaggagcgcaagatcatgcgactgcttttgaaggtc
aagaacggaacaccgcccatgcgaaagacggcacttcgtcaacttacagacaatgcccgg
cagtttggcgcaggtgcgctcttcaaccagatccttccacttttgatggagcgcacattg
gaggatcaggaacgccatttgctcgtcaaggtcattgaccgtgtcctttacaagcttgat
gaccttgttcgtccttatgtccacaagatcctcgtcgttattgagcctctccttatcgac
caagactactatgctcgtgtggaaggtcgagagattatttccaaccttgcaaaggccgct
ggacttgctcacatgatcagtacaatgcgcccggacttagaccaccaagatgagtatgtg
cgaaacaccactgctcgagctttcgcagtagtcgcatccgccctcggtattcctgcgctg
ctaccttttctccgcgctgtttgccggtcgaagaagtcgtggcacgcacgccataccggt
gtgaaaattgtacagcagattcccattctcatgggctgtgctatcctacctcatttgaag
ggacttgtggagtgtattggcgagaacctcaacgatgaacagccaaaggtccgcatggtc
acagcccttgcgcttgccgccctggctgaagctgccagcccttacggtatcgaatctttt
gatgacatcctcaacccgctctggaccggagctcgccgccagcgtggcaaggctttggca
tctttcctcaaggctgtgggctacgtgatcccgctgatggacgaagagtactctaactac
tacaccagccagatcatggagattgtcattcgcgagttccagtcacccgacgaggagatg
aagaaggttgtgctcaaggtcgtctcgcagtgttccaacacagcgggtgtcactcccgta
tacttgaaggacaatgttttgcctgagttcttcaagcacttctgggtccgccgtatggca
ctcgacaagcgtaactaccgccaagttgttgacactaccgtcgacctggcacagaaggca
ggtgttgctgagatcgttggtcgtatcgttagcaacatgaaagacgagaacgaagcatac
cgtaagatgactgttgagaccgtcgacaaggtcattagcactctaggcgcgcacgatgtc
gacgagcgcttggaggagcaactcattgatggtgtgctcgttgctttccaggatcagact
atcgaggaccccatcgttatcgacggtttcgccacggtcgtcaacgcgctcggtgagcgt
accaagacctaccttccacagattgttgcaaccgttcttgctcgcctcaacaacaagtca
gctacagttcgccagcaagctgcagacctcatctcgcggatcacgtttgttatgcagaag
tgtgacgaagacccacagctgatcaagcttgctcaagcactctacgaataccttggtgaa
gagtaccccgaagttcttggttccattcttggtgcccttcgcgccatcgtcacagtcgtc
ggccttcatgccatgcagccccccatcaaggacctgttgccccgcctgacacctatccta
cgtaaccgacatgagaaggtacaggagaacaccatcgaccttgtcggtcgtatcgctgat
cgaggtgcaaactacgtcaaccctcgtgaatggatgcgtatctgtttcgaacttctcgac
atgttgaaggctcacaagaagggtatccgtcgtgctgccaacaacaccttcggttacatc
gccaaagccatcggtccccaggatgtactggctacacttctcggtaatcttcgagtccag
gagcgtcagtcccgtgtctgcacagctgttgccatcggtatcgttgctgagacctgtgcg
cctttcactgttcttcctgcattgatgaacgaataccgcgtaccggagctgaacgtgcag
aacggtgtactcaagtctctatcattcatgtttgagtacattggtgagatggccaaggac
tacgtctacgctattacaccacttctggaggacgctctcattgaccgagatcaagtgcat
cgtcaaactgctgcatcagtagtcaaacacgttgccttgggctgtgttggtcttgactgc
gaggatgccatgattcacttgctcaacctcctctggccaaaccttttcgaaactagtcca
catgtcattgacaggattattgaggccattgagggtgtccgaaacgccgttggcacaccg
ctcgtcatgaactatgtctgggcaggtctatttcatcccgctcgcaaagttcggcagccg
tactggcggatctacaacgatgcgtacgtccagaacgccgatgcgatggtcccggctttc
ccggctttcgatgaaccggaggtgcgcaggcacgagctggacattttcatctaa
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