Portunus trituberculatus (swimming crab): 123498395
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Entry
123498395 CDS
T07853
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123498395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123498395
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123498395
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123498395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
TFIIA
DDHD
EOS1
EIF4E-T
DUF7813
NPR3
V_ATPase_I
Zip
Tim54
NatA_aux_su
DUF2126
SKG6
Motif
Other DBs
NCBI-GeneID:
123498395
NCBI-ProteinID:
XP_045101435
LinkDB
All DBs
Position
48:complement(24536416..24565463)
Genome browser
AA seq
2563 aa
AA seq
DB search
MNLDSLTAALSHIGNLVASLTKKNLNSSAQEIQEVVRQFGGEAERHLYRVLIGHLEWSGS
QGGDSHRPSPNNNNNNNKDKEAVSSVGVASLTWSSTNGGASALLLQHLGATLPSSTFITS
LAFAIANPPNPNKVKPQWVSGVCRALKLSRLQEVTLCLYLLQETNQEVRSQSIAILKLKL
PDLVRAYTDTESEDRELLELSTEALHLLLTHIVHLWRDPPVSLLSQESIQAFIFALQREF
PQSRVPVVLAPLLYPDSDILMEKMTQEQPTNMAKNLLDGSLADLVLELGYSFCNTVEECR
NNLGNFGVNSITPAAVAKVLGVMVRTHTGLPSEQIGLQNLNTPSSLWSDSKDKASNSQSQ
SGGNEVGVPGSGSLSGPHGWNVEVFIKGLLEVVPNLNVKEIFTKLDHKGFLVKDRQGLKL
LMTGLRCLLQGQGIRLDLFPVECFYHQWKNTEEQLNLITQILKNPEIFCFTDFHCHMIST
DCLKTLPELDNKDVATWKSVQLLEILLYLGEAGHYTSVKELFKFPIQHCPDILVLGLVQV
NLPYTMLRQDLITSLIPIFLGNHPNAGIILHHAWHTQNHTNTVRQIIMHAMSEWYMMVEN
DQTRLSRILDVAQDLKALSLLLNAQSFPFVVDLACLAYRREFLKLDKWLTDKIREHGEPF
ISACVKFLQRRCPQLLGGKDDMLPKSSQLPPETMGTILVCLNACAMNVSQELSDTIIQMF
QNCNLINRRTQVGVIGFPGPGPTPSNEGPLGNITSSLSNLNLGGAGVSSSIFPTPVSSSM
SFGGIGSIGTAPGSPGRPLGPSTAPGTSQSPLSSILPNLPLGPALPVAPVGSQLPALPAS
SNLPSSLRSHSVQPTVAPPRQMDMSQIFDMPQSVSKEVEDEANSYFQRIYNHPPHPTLSI
EEVLDMLKKFHESSNKREREVYSCMLRNLFEEYRFFPTYPDKELFTTARLFGGIIEQGLV
EYMALGVALRYVMEALQKPHGSKMYYFGIVALDRFRSRLKEYPRYCQHLMAIQHFNEFQP
HLIEYIKYGTQSQEPPTRPSGVVLPPSINVSPSSSVPGTSSSLVVAPVTGGGAPPPPGVP
PASSVAKSLPPATTTTTTTAGAIIKPQLLSAANNAVGSGKPTITTTNIETLLVATEKEEK
ITPPPEHIQDKVAFIFNNLAQVNLPQKCEELREVVGEEYWLWVAQYLVMKRASIENNFHT
LYSLFLDQLKMNSFNSMVCRETLRNIKVLLRADKSVANFSDKSLLKNLGHWLGMLTLAKN
KPILHTDIDMKSLLIESYNKGLQEMQYVIPFVAKVMESCAKSRVFKAPNPWTMAIMNVLA
ELHKEPEMKLHLKFEIEVLCNKLEINLDDLKPANVLNDRERIARLKPQLSQPGGSKRAES
TPLFPALPVFAAASFMPKTPSWSQAVPPGAIVDTNTASVQSSSVGATPTPLTVLPPHPST
TPTPIQPQQPPASEPRFIYSDISVASLRGLEPHISVSVPQFLLQVCGVATNAQLKQLVRH
AVELAVQEIVAAVIERSIKIAITTAEHIIKKDFALDPDESRMRVATHHMVRNLTAAMAMI
TCRDYLATNITKSIKQGLMQAFSRANPQQLPQPVEQMEQLAAAIAQENVGIACAFIQKNA
AEKAVNEMDKRLSQEYEARKVARTEGRRYCDPMILTYQVERMPEQIRLKVGGITPPQMAV
YEEFARNIPGFLPITDQDTMFLAKPVPISLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQGPHTQQQAFGNEEATAFLVLTERISAELEHTIQTFTTLAPS
SPLLSMLHSLREGLLLTRTNRDVHTAQVLLRKCVDNLIEGAREFPSEPELNQLALRFRDC
HLIVLKAMADHRCYGVPWTSKNITKCWTEGRDEVKYNLDVVDWLIRSSLLNHQMLDEHLA
RTLDDPRVHSYFPSLFVMQLVQMYLIDDPSNSVLSETDLQLTLEALVRLCHSRQAPEGLI
ALIEALRMKHDLLTGERIPGSNSLSNLNNPISAGPSLHFHSGVTQARDFQDPPALQEKTE
VLLREWINMYHSPSAGQGSASAFQHFVKQMNLHGILKTDDLITRFFRICISMCRDLCVRS
ILEQGQGPSPTYVRSKCFQNLDAFVRLIALLVKHSGEATNPTTKINLLNKVLGLVCGIMI
HDIESNSTDFQQLPYHRILIMLFLELNAPETILESINLPVCEVLMAFTQTLHLLRPSKCP
GFAYAWLEIVSHRVFIGRMLAITPQQKGWSMYSMLLADLFKFLAPFLRNAELAKPLTMLY
KGTLRVLLVLLHDFPEFLCEYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKV
DMLPEITVSPKIHTTVANLIQPPDFKKNLDSYLKNRTPVTFLSDMRTYLQQVSSEPGMRY
NMSVMNALVLYVGMQAIAQIHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLNAI
ANQLRYPNSHTHYFSCTLLHLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELI
KNPSFKFWSHEFVKCAPEIEKLFESVARSCMVQKVSAAREGEA
NT seq
7692 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactgctgctttgtctcatattggtaatctggtcgccagtttg
acaaagaaaaacctgaactctagtgcacaagagattcaggaagtggtacgtcagtttggt
ggagaggcagagcgacatttgtaccgggtgttgattggtcacctggagtggtctgggtct
cagggaggagatagccaccgaccttcaccgaataacaacaacaataataacaaggacaag
gaggctgtgagcagtgtgggtgtagcctccctcacctggtcatctaccaacgggggggcg
agtgccctccttctgcagcatctgggggccactcttccttcttcaacttttattactagt
cttgcatttgccatagcaaacccaccgaatcccaacaaggtcaagccacagtgggtcagt
ggtgtgtgtagggctctgaagctctcccgtcttcaggaggtgaccctctgcttgtacctg
cttcaggaaaccaaccaagaagtacgaagtcagtccattgccatcctcaagcttaaactt
ccagatcttgttcgtgcatatactgatacagaatctgaggatcgtgagctgttagagctt
tcaacagaagctctacatctgttgttgacacacattgtacatttgtggagggatccacca
gtgtccctcttatctcaggagtcaatacaggctttcatatttgcactccagcgagagttt
cctcaatcacgagtaccagtggttttggctcctttgctttaccctgactcggacatcctc
atggaaaagatgactcaagaacaacctactaatatggccaaaaacctactggatgggtca
ttagcagacctggtgcttgaactaggttatagtttctgtaatactgtagaagaatgtcgg
aacaacttgggcaactttggggtgaactccataacaccagcagctgtggccaaagtgttg
ggtgtgatggtgcgcacccatactggtctgccttcagaacagattggactgcaaaacctc
aacacccctagttccttatggagtgacagcaaagacaaagcttctaatagtcaatcacaa
tcaggtggaaatgaagttggtgtaccaggctcgggcagcctctcgggacctcacggctgg
aacgttgaggtgttcatcaaaggcctgttggaagttgtacccaatttgaatgttaaggaa
atcttcaccaagctggaccataaaggattcttagtcaaagatagacaaggcttgaagctt
ctcatgactggtctaaggtgtctccttcaaggccaaggaatacggcttgacttatttccg
gtggaatgcttctatcaccagtggaagaatactgaggagcaactaaatctcatcacacaa
atactcaaaaatcctgaaatattttgcttcactgactttcattgccacatgatctcaact
gattgccttaagacccttccagaattggataacaaagatgttgctacatggaagtctgtt
caattgctggaaatactcctgtatttgggggaagctggccactacacatctgtgaaggag
ctctttaaatttcctatccagcattgtccagacattctggtgttaggtttagtgcaggtc
aacctgccttacacaatgttgcgacaagatctcatcacttcactgatcccaatattcctt
ggaaatcatccgaatgctggtattattttacaccatgcatggcacacacagaaccacacc
aacacagtgcgtcagatcatcatgcatgccatgtctgaatggtacatgatggtggaaaat
gaccagacaagactgagtcgtattctagatgtggcacaggaccttaaagctttatctctg
ctccttaacgcccagtctttcccctttgtagtagacttggcttgcctggcttacagacgt
gagttcttaaagttggacaaatggttgactgataaaattcgggaacatggagaaccattc
atatcagcttgtgtaaagttccttcagcgtagatgtcctcagctgctgggagggaaggat
gacatgctgcctaagtcctcccaactacctcctgagacaatggggaccatccttgtttgc
ctcaatgcttgtgccatgaatgtgtcccaggaactgtcagacaccataatccagatgttc
cagaactgtaacttgatcaacagaagaactcaagttggtgtgattggttttcctggtcct
ggtccaactccttctaatgaaggtccattgggaaacataacatccagcctcagcaacttg
aaccttggtggtgctggtgtatcctcctcaattttccctactcctgtatcgtcttcaatg
agctttggagggataggatcgattgggacagctccaggctccccaggtcgtccccttgga
ccttccactgcaccaggaacatcccagtctcctttgtcctcaatattacctaatcttcct
ctgggaccagcccttcctgtggcaccagtgggatctcaactccctgcactgcctgcctca
tccaacctaccctcctcgctgaggtctcactcagttcaacctactgttgcacccccaaga
caaatggatatgtcacaaatttttgatatgccacaatcagtcagcaaggaggtagaagat
gaggccaacagttactttcaacgtatctacaatcatcctcctcatcctactctatccata
gaggaggttttagatatgttgaagaaattccatgaatcttcaaataagagggagagagaa
gtttattcttgtatgctgagaaatctctttgaagaatatagattttttccgacatatcca
gataaggaactcttcaccacagcaaggttgtttggtggcatcattgaacagggcctagtt
gaatacatggctcttggtgtggctttgagatatgtaatggaggcacttcagaagccacat
ggcagcaagatgtattactttggtatagtggccttagataggtttcggagtcgtctcaag
gagtacccaaggtattgtcaacatttgatggcaattcaacacttcaatgaatttcagcca
catttgattgagtatatcaagtatggaacacagtcacaagaacctcctacacgtccctct
ggggtggtcctgcctccttctatcaatgtgtccccaagttcatcagtgcctggaacttca
tcttcacttgtggttgctccagtcactggtggaggggctcccccaccaccgggagtgcct
cctgcatcatctgtagcaaaaagtctgcctccagccacaactactaccactaccactgca
ggagctatcatcaagcctcagttactctcagctgccaataatgcagttgggtctggaaag
ccaacaattactacaaccaatattgagacgcttcttgtggctacagagaaagaggagaaa
ataacaccccctccagagcacattcaagacaaagttgccttcatattcaataacttagct
caagtcaatttacctcagaagtgtgaagaactacgtgaagtggtgggagaggagtactgg
ctatgggtggctcagtacttggttatgaaaagagcctccattgaaaataatttccacact
ctctactcactctttcttgaccaactcaagatgaactccttcaactcaatggtctgtcgg
gagactctcagaaacatcaaggtacttctaagggctgacaagtctgttgccaacttctca
gacaaatccttgctgaagaatcttggtcattggctgggtatgctcaccctagccaaaaac
aaaccaatccttcacacagatattgacatgaaatccctgctgattgaatcatacaataag
gggctacaggagatgcagtatgtgatacccttcgttgctaaggtgatggagtcttgtgcc
aagagtcgtgtgttcaaggctcccaatccttggacaatggccatcatgaatgttttggca
gagctccataaggaaccagaaatgaaactgcatctgaagtttgaaatagaggtgctctgc
aacaagctggaaatcaatctggatgatcttaaaccagctaatgtattgaatgatcgggaa
cgtattgctcgcctcaagccccaactctcacagcctggagggtctaagagagcagagtca
acacctctctttcccgctttgccagtcttcgctgcagcttctttcatgccaaagactcca
agctggtctcaagcagttccaccgggtgcaattgtggacacgaacacagccagtgtccag
agctcttcagttggtgccactcccaccccactcaccgtgctgcctccccatccctccacc
actccaactcctatccagcctcagcaaccacctgcctctgaaccacgctttatttactca
gatattagtgttgcctcgctaagaggcttagagcctcacatatctgtctctgtacctcag
tttcttcttcaggtttgtggtgtggcgaccaatgcacaattgaagcagctagttcgtcat
gctgtggagctggccgtccaagagattgttgcagcagtcattgagcgcagcatcaagata
gccatcaccactgctgaacatattattaagaaagactttgcactggatccagatgagtct
cggatgcgagttgccacccatcacatggtgcgcaacctgactgcagctatggccatgatc
acatgccgagattacctggccaccaacatcaccaagagtatcaaacagggactgatgcag
gccttctctcgtgcaaatcctcaacagctgccacaacctgtggaacagatggagcaactt
gctgctgccattgcacaggagaatgttggcattgcctgtgccttcatccagaaaaatgct
gctgaaaaagctgtaaatgaaatggacaaaagattgtcacaggaatatgaggctcgcaaa
gtagctcgaactgagggacgccgctactgtgatccaatgatcctgacataccaagtggaa
cggatgcctgaacaaatacgtctgaaagtgggcggcatcaccccaccacagatggctgtg
tatgaagaatttgcccgtaacatcccaggctttttgcccatcacagatcaggacacaatg
tttttggccaagcctgtgcctatcagcttgcaacagcaacaacaacagcagcagcaacag
cagcagcaacaacagcagcagcagcagcaacagcagcagcagcagcagcagcagcaacaa
caacagcagcagcaacagcagcagcaacaacagcaacagcagcaacagcagcagcaaggt
cctcacacacaacagcaagcctttggaaatgaagaagcaacagcattccttgtcctgaca
gagagaatcagtgctgaactagagcacaccatccagactttcaccaccttggctccaagc
tctccactgctgtccatgcttcattccctacgtgaagggttgctactcacacgtactaac
agagacgtccacactgctcaagtactcttgaggaagtgtgtggacaacctgattgaggga
gcacgagaattccctagtgaacctgagcttaaccagttagcactccgcttcagagactgt
catctcatagtgctcaaggccatggctgatcatcgctgttatggtgttccctggacctcc
aagaatattaccaagtgttggacagagggacgggatgaggtcaaatataatttggacgtg
gtagactggctaatccgctccagtctactgaaccatcagatgcttgatgaacaccttgca
cgcacccttgatgatccccgggtccactcctacttcccttctctctttgtgatgcagcta
gtccagatgtatcttatagatgacccaagcaatagtgtgttgagtgagaccgacttgcag
ctaacattagaagctctggtacgtctgtgtcactcaaggcaagctcctgaaggtctcatt
gctctcattgaagctctccgcatgaagcacgacttgctgactggagaacgtatccctggg
agcaacagtctcagtaacttaaacaatcctatttctgctgggccaagtcttcacttccat
tctggagtgacacaagccagggacttccaggatcccccagcactgcaagaaaagacagag
gtgctgttgcgtgagtggatcaacatgtaccactccccctcggctggccaggggtctgct
tcagccttccagcattttgttaagcagatgaatcttcatggtattttgaagaccgatgat
ctcattactagattttttagaatatgcatcagtatgtgtcgtgacctgtgtgtgcgttcc
atcctggagcaagggcaggggccatcacccacctatgtacgcagcaaatgcttccaaaat
ctagatgcatttgtgcggcttattgccttattagtcaagcactcaggagaagctaccaac
cctacaacaaaaattaacttacttaataaggttttgggccttgtttgtgggatcatgatt
catgatatagaatccaacagtacagacttccaacagctgccatatcaccgtatcctcatt
atgctcttcctggaattgaatgcccctgaaacaatcctcgagtcaatcaatcttccggta
tgtgaagtgctgatggccttcacccagacactgcacctgttgcggcccagcaagtgccct
gggtttgcttatgcttggctggaaattgttagtcacagagtgttcattggccgcatgttg
gccatcactccacaacaaaaaggatggtcaatgtactcaatgttattggcagatctgttc
aaatttttagctcccttcctaagaaatgcagagctagccaagccactgaccatgctgtac
aagggaaccctgcgagtgctgttggtgctgttgcatgactttccggaattcttgtgtgaa
taccactatggtttctgtgatgtcatccctccaaactgcattcagatgcgcaacctcatc
ctttcagcatttcctagaaacatgcgccttccagatcccttcacaccaaaccttaaagtt
gacatgttaccagagattacagtgtctcccaaaatccacactactgttgcaaaccttatc
cagccccctgacttcaagaagaatttagattcctacttaaagaaccgaacaccagtcacg
tttctctctgacatgagaacttatttgcagcaggtctctagtgagcctggaatgcggtac
aacatgtcggtgatgaatgctctggttttgtatgttggcatgcaggccattgcacagatc
cacagcaagggcctcactccttccatgtccaccattgcacactccgcccacatggacata
tttcagaatcttggtgttgacttggacactgaaggccgatacctgttcctgaatgccatc
gccaatcagctgcgctaccccaacagtcacactcactacttcagctgcaccctcctgcac
ctttttgctgaagccaacacagaagcaattcaggaacagatcacccgagtcttgctggaa
aggctgatagtgaaccggccacatccatggggactcctcatcacctttattgaacttatc
aagaatccctcattcaagttttggagccatgaatttgtaaagtgtgctccagaaattgag
aagttgtttgagtcggtggctcggtcatgcatggtccagaaagtgtctgctgccagggag
ggcgaggcctga
DBGET
integrated database retrieval system
