Pandoraea thiooxydans: ABW99_02495
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Entry
ABW99_02495 CDS
T03947
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABW99_02495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptx03021
]
ABW99_02495
Transcription machinery [BR:
ptx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABW99_02495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
Motif
Other DBs
NCBI-ProteinID:
AKJ70312
UniProt:
A0A0G3EY08
LinkDB
All DBs
Position
1339040..1341019
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AA seq
659 aa
AA seq
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MNEDQTKVEKQKARDRRAKEKALLKDAFASHQPGTAEELEERRTKLKALIKLGKERGFLT
YAEINDHLPDDLVETEALEGVIGTFNDMGIAVYEQAPDAETLLLNDNAPAATSDDEVEEE
AEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISTCPT
TIAEILAQADRVANEEIRIDEFVDGLIDPNAEENALAAAAAEEEEFEADAEEEETEEADD
EDDGDGGASANAAQLEQLKRDSLEKFQSIADWFQKMRRAFEKEGYQSKPYMKAREAIQTE
LMSIRFTARTVERLCDTLRSQVDEVRKIERAILHIVVDKCGMPRADFVSRFPGNETDLNW
VHSVVADGKPYSAIVERNVPAVQELQQKLIDLQARVVLPLPELKDVNRKMSEGERRARQA
KREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIR
KIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVKDVLDSLTPRE
AKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaagatcagaccaaagttgaaaagcaaaaggcgcgtgatcgccgcgccaaggaa
aaagccctcctgaaggatgcgttcgcctcgcaccagcccggcaccgccgaagagctggaa
gagcgccgcaccaagctgaaggcgctgatcaagctcggcaaggagcgtggcttcctcacg
tacgccgagatcaacgatcacctgccggacgatctggtggaaaccgaagcgctcgagggc
gtgatcggcaccttcaacgacatggggattgccgtctacgaacaggcgcccgatgccgag
acgctgctgctcaatgacaacgctccggccgccaccagcgacgacgaggtggaagaagaa
gccgaggcggcgctgtccaccgtcgactcggaattcggccgcacgaccgacccggtgcgc
atgtacatgcgcgaaatgggcactgtcgagttgctcacgcgcgagggcgaaatcgagatc
gcgaagcgtatcgaggaaggtctcaagcacatggtgcaggccatctccacatgtccgacc
acgattgccgaaatcctcgcgcaggccgaccgcgtggccaacgaagaaatccgtatcgac
gaattcgtcgatggcttgatcgacccgaatgccgaggaaaacgctctggccgcggcggca
gccgaggaggaagagttcgaggctgacgcggaggaagaggaaaccgaagaggctgacgac
gaggatgatggcgacggcggcgccagcgccaatgccgcgcaactggaacagctcaagcgc
gactccctggagaaattccagtcgatcgccgactggttccagaagatgcgccgtgccttc
gagaaggaaggctatcaatcgaagccgtatatgaaggctcgcgaggcgatccagaccgaa
ttgatgtcgattcggttcaccgcgcgcacggtcgagcgcctgtgtgacacactgcgctcg
caggtcgacgaagtgcgcaagatcgagcgcgcgattctgcatatcgtcgtcgataaatgc
ggcatgccccgcgccgatttcgtgagccgcttccccggcaatgaaaccgacctgaactgg
gtgcacagcgtggtcgccgatggcaagccgtacagcgcgatcgtcgagcgcaacgtgccc
gcggtgcaggaactgcagcaaaaactgatcgatctgcaagcgcgtgtggtgttgccgttg
cccgaactgaaagacgtcaaccgcaaaatgtcggaaggcgagcggcgcgctcgtcaggcc
aagcgcgaaatgaccgaggccaatttgcggctggtgatctcgatcgccaagaaatacacc
aatcggggcctgcaattcctcgacctcatccaggaaggcaacattggcttgatgaaggcg
gtcgacaagttcgaatatcgccgcggttacaagttctcgacctatgccacgtggtggatc
cggcaggcgatcacccgttcgattgccgatcaggcgcgcaccatccgcattccggtgcac
atgatcgagacgatcaacaagatgaatcgtatctctcgccagattctgcaagaaaccggt
ctcgagcccgatcctgcgacgctggccgagaaaatggaaatgccggaggacaagatccgc
aagatcatgaaaatcgccaaagagccgatttccatggaaacgccgatcggcgacgacgac
gattcccatcttggcgatttcatcgaggacaccggcacggtggcaccggccgacgcagcc
ttgcacggcagcatgcgagacgtcgtcaaggacgtgctcgactcgctcacgccgcgtgag
gccaaggtcctgcgcatgcgctttggcgtggaaatgagcaccgaccatacgctcgaggaa
gtaggcaagcagttcgacgtcacacgcgagcgcattcgtcagatcgaagccaaggcgttg
cgcaagctgcgtcacccgagccgctcggacaaactgaagtcgttcctggaaggcaactga
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