KEGG   Pandoraea thiooxydans: ABW99_02495
Entry
ABW99_02495       CDS       T03947                                 
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
ptx  Pandoraea thiooxydans
Pathway
ptx02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ptx00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ABW99_02495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptx03021]
    ABW99_02495
Transcription machinery [BR:ptx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ABW99_02495
SSDB
Motif
Pfam: Sigma70_ner Sigma70_r1_1 Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 SPO22 GerE
Other DBs
NCBI-ProteinID: AKJ70312
UniProt: A0A0G3EY08
LinkDB
Position
1339040..1341019
AA seq 659 aa
MNEDQTKVEKQKARDRRAKEKALLKDAFASHQPGTAEELEERRTKLKALIKLGKERGFLT
YAEINDHLPDDLVETEALEGVIGTFNDMGIAVYEQAPDAETLLLNDNAPAATSDDEVEEE
AEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISTCPT
TIAEILAQADRVANEEIRIDEFVDGLIDPNAEENALAAAAAEEEEFEADAEEEETEEADD
EDDGDGGASANAAQLEQLKRDSLEKFQSIADWFQKMRRAFEKEGYQSKPYMKAREAIQTE
LMSIRFTARTVERLCDTLRSQVDEVRKIERAILHIVVDKCGMPRADFVSRFPGNETDLNW
VHSVVADGKPYSAIVERNVPAVQELQQKLIDLQARVVLPLPELKDVNRKMSEGERRARQA
KREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIR
KIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVKDVLDSLTPRE
AKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq 1980 nt   +upstreamnt  +downstreamnt
gtgaacgaagatcagaccaaagttgaaaagcaaaaggcgcgtgatcgccgcgccaaggaa
aaagccctcctgaaggatgcgttcgcctcgcaccagcccggcaccgccgaagagctggaa
gagcgccgcaccaagctgaaggcgctgatcaagctcggcaaggagcgtggcttcctcacg
tacgccgagatcaacgatcacctgccggacgatctggtggaaaccgaagcgctcgagggc
gtgatcggcaccttcaacgacatggggattgccgtctacgaacaggcgcccgatgccgag
acgctgctgctcaatgacaacgctccggccgccaccagcgacgacgaggtggaagaagaa
gccgaggcggcgctgtccaccgtcgactcggaattcggccgcacgaccgacccggtgcgc
atgtacatgcgcgaaatgggcactgtcgagttgctcacgcgcgagggcgaaatcgagatc
gcgaagcgtatcgaggaaggtctcaagcacatggtgcaggccatctccacatgtccgacc
acgattgccgaaatcctcgcgcaggccgaccgcgtggccaacgaagaaatccgtatcgac
gaattcgtcgatggcttgatcgacccgaatgccgaggaaaacgctctggccgcggcggca
gccgaggaggaagagttcgaggctgacgcggaggaagaggaaaccgaagaggctgacgac
gaggatgatggcgacggcggcgccagcgccaatgccgcgcaactggaacagctcaagcgc
gactccctggagaaattccagtcgatcgccgactggttccagaagatgcgccgtgccttc
gagaaggaaggctatcaatcgaagccgtatatgaaggctcgcgaggcgatccagaccgaa
ttgatgtcgattcggttcaccgcgcgcacggtcgagcgcctgtgtgacacactgcgctcg
caggtcgacgaagtgcgcaagatcgagcgcgcgattctgcatatcgtcgtcgataaatgc
ggcatgccccgcgccgatttcgtgagccgcttccccggcaatgaaaccgacctgaactgg
gtgcacagcgtggtcgccgatggcaagccgtacagcgcgatcgtcgagcgcaacgtgccc
gcggtgcaggaactgcagcaaaaactgatcgatctgcaagcgcgtgtggtgttgccgttg
cccgaactgaaagacgtcaaccgcaaaatgtcggaaggcgagcggcgcgctcgtcaggcc
aagcgcgaaatgaccgaggccaatttgcggctggtgatctcgatcgccaagaaatacacc
aatcggggcctgcaattcctcgacctcatccaggaaggcaacattggcttgatgaaggcg
gtcgacaagttcgaatatcgccgcggttacaagttctcgacctatgccacgtggtggatc
cggcaggcgatcacccgttcgattgccgatcaggcgcgcaccatccgcattccggtgcac
atgatcgagacgatcaacaagatgaatcgtatctctcgccagattctgcaagaaaccggt
ctcgagcccgatcctgcgacgctggccgagaaaatggaaatgccggaggacaagatccgc
aagatcatgaaaatcgccaaagagccgatttccatggaaacgccgatcggcgacgacgac
gattcccatcttggcgatttcatcgaggacaccggcacggtggcaccggccgacgcagcc
ttgcacggcagcatgcgagacgtcgtcaaggacgtgctcgactcgctcacgccgcgtgag
gccaaggtcctgcgcatgcgctttggcgtggaaatgagcaccgaccatacgctcgaggaa
gtaggcaagcagttcgacgtcacacgcgagcgcattcgtcagatcgaagccaaggcgttg
cgcaagctgcgtcacccgagccgctcggacaaactgaagtcgttcctggaaggcaactga

DBGET integrated database retrieval system