Candidatus Pelagibacter ubique: SAR11_0541
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Entry
SAR11_0541 CDS
T00257
Symbol
rfbB
Name
(GenBank) dTDPglucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub00521
Streptomycin biosynthesis
pub00523
Polyketide sugar unit biosynthesis
pub00541
O-Antigen nucleotide sugar biosynthesis
pub01100
Metabolic pathways
pub01110
Biosynthesis of secondary metabolites
pub01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
SAR11_0541 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SAR11_0541 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
SAR11_0541 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SAR11_0541 (rfbB)
00525 Acarbose and validamycin biosynthesis
SAR11_0541 (rfbB)
Enzymes [BR:
pub01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
SAR11_0541 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
Baculo_FP
MBT
Motif
Other DBs
NCBI-ProteinID:
AAZ21362
UniProt:
Q4FN77
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All DBs
Position
534588..535577
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AA seq
329 aa
AA seq
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MKIFIIGSNSFMGNSFINYIYNRNYTNIKIIGASRTNQNNLNLNSNMLFKKKNFKFFKID
LNKDLKKLILILKKEKPNIIYNFAAQSIVQNSWDAPLDWYKTNLLSNVKLLDYLKNVDYL
DKYIQSSTPEVYGSTKGKIIESFNYFPSTPYASSKASIDMYLKNLFDNYKFPVLFTRASN
IYGPGQKIYKLIPKALISIMLGKKIKLDGGGLSKRSFIYSDDVSSALMKINSKGKAGEIY
HITNEKMHTIKDIVKIICKNLNVEFEDFTQIATERPGKDFSYNMSSKKIKKIGWKPEANI
FFGIDHTKSWIMNNFEKLKKNKLVYEHKS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatatttataattggttctaattcatttatggggaatagttttatcaattacata
tataatagaaattatacaaatattaaaattattggggcaagtagaacaaatcaaaataat
ctaaaccttaactcaaatatgctatttaagaaaaaaaattttaaatttttcaaaatagat
ttaaataaagacttgaaaaaattaattttaattttaaaaaaagaaaaaccaaatattatc
tataattttgcagcacaaagtattgttcaaaatagttgggatgcacctttagattggtac
aaaacaaatttactttcaaatgtaaaacttcttgattatcttaaaaatgtggattacttg
gataaatacatccaatcatcaacgcctgaagtatatggaagcacaaaaggtaaaattatt
gaaagttttaattattttccaagtacaccttatgcatcatcaaaagcttcaatcgatatg
tatttaaaaaatttatttgataattataaatttccagtattatttacgagagcatcaaac
atatatgggccagggcaaaaaatttataagctcataccaaaagcattaatatctattatg
ttaggtaaaaaaattaaattagacggtggtggtttatcaaaaaggtcgtttatttattct
gatgatgtttcctcagcgctaatgaaaattaatagtaaaggaaaagcaggagaaatttat
catataacaaatgaaaaaatgcacacaattaaagatattgtaaaaattatttgtaaaaat
ctgaatgtagaatttgaagattttacgcaaatagcaacagaaagaccaggtaaagatttt
tcttacaacatgtcatcaaaaaaaataaaaaaaataggctggaaaccagaagcaaatatt
ttttttgggatagatcacactaaaagctggattatgaataattttgaaaaattaaaaaaa
aataagttggtatatgaacataaaagttaa
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