Candidatus Pelagibacter ubique: SAR11_1093
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Entry
SAR11_1093 CDS
T00257
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pub
Candidatus Pelagibacter ubique
Pathway
pub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAR11_1093 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pub03021
]
SAR11_1093 (rpoA)
03400 DNA repair and recombination proteins [BR:
pub03400
]
SAR11_1093 (rpoA)
Enzymes [BR:
pub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAR11_1093 (rpoA)
Transcription machinery [BR:
pub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAR11_1093 (rpoA)
DNA repair and recombination proteins [BR:
pub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAR11_1093 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
AAZ21897
UniProt:
Q4FLP1
LinkDB
All DBs
Position
complement(1058652..1059680)
Genome browser
AA seq
342 aa
AA seq
DB search
MESLNVNAKNWKALIKPAQLDVKISDDKSHAKIIAEPLEKGYGLTLGNSLRRILLSSIRG
AAVTSIQIDGVLHEFTSIKGVREDVTDIVLNVKSLALKSSSETTKKLILDAKGPGEIKAS
DIAPVADIEILNPDLVICNLDENTHFHMEMNVGTGKGYVPAVMNKPEEPPLGLIAIDSLY
SPVKKVSYSISTAREGKALDYDKLIMEVETNGSISAEDAVAYSARIFQDQLNMFVNFDEP
VEVPVKEVSSEPEFNKNLLRKVDELELSVRSMNCLKNDNIIYIGDLVQKSEGEMLRTPNF
GRKSLNEIKEVLTGMSLYLGMEIPNWPPENIAEMSKKLEEQI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttaaatgtaaatgctaaaaattggaaagcattaattaaaccagctcaatta
gatgttaaaattagtgatgacaaatcacatgcaaaaattatcgcagaacctttagaaaaa
ggatatggtttaactttaggtaattctttaagaagaattttactttcatcaatcagaggt
gctgctgtaacttcaattcaaattgatggtgttttacatgaatttacatctatcaaaggt
gttagagaagatgttactgacatagttttaaacgttaaatcattagctttaaaaagctca
tcagaaactactaaaaaacttattttagatgctaaaggtcctggagaaattaaagcttct
gacatagcaccagttgccgatattgaaattttaaatcctgatctggttatttgtaattta
gatgaaaatacgcatttccatatggaaatgaatgttggaacaggtaagggatacgttcct
gcagtaatgaacaaaccagaagaaccacctttgggattaattgctatagattctttatat
agtccagttaagaaggtttcttactctataagcacagcaagagaaggaaaagcccttgat
tatgataaattaattatggaagttgaaactaatggatcaatttctgctgaagatgccgtt
gcttattctgctagaattttccaagatcaactaaatatgtttgttaattttgacgaacct
gttgaagtacctgtaaaagaagtttcatctgagcctgaattcaataagaatttattaaga
aaagttgatgaacttgaattatctgtgcgttctatgaattgtcttaaaaatgataatatt
atttacattggagatctagttcaaaagtcagaaggtgaaatgcttagaacacctaacttt
ggaagaaaatcacttaatgaaataaaagaagttttaactggtatgtctttatacttaggt
atggagattccgaactggccaccagaaaatatagctgaaatgtctaaaaagttagaggag
caaatctaa
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