Pullulanibacillus sp. KACC 23026: PU629_21805
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Entry
PU629_21805 CDS
T08861
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
puk
Pullulanibacillus sp. KACC 23026
Pathway
puk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
puk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PU629_21805 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
puk03021
]
PU629_21805 (rpoB)
03400 DNA repair and recombination proteins [BR:
puk03400
]
PU629_21805 (rpoB)
Enzymes [BR:
puk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PU629_21805 (rpoB)
Transcription machinery [BR:
puk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PU629_21805 (rpoB)
DNA repair and recombination proteins [BR:
puk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PU629_21805 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WEG12681
LinkDB
All DBs
Position
complement(4678412..4681933)
Genome browser
AA seq
1173 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARIKEVLELPDLIEIQTSSYQWFLDEGIREMFQDISPVEDFTG
NLVLEFVDYSLGEPKYSVDESKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMT
DSGTFVINGAERVIVSQLVRSPSVYYNPKFDKNGKKGFTATVIPNRGAWLEFETDAKDVV
YVRIDRTRKLPITVLLRALGFGSDQEIIDLLGEDEYLRNTLDKDNTEGTEKALIEIYERL
RPGEPPTVENAKNLLETRFFDPKRYDLASVGRYKMNKKLHIKNRLFNQKLAEPLVDPETG
EIIAEKGTLLDRRTLDRLLPMIQKSLGFKTYQPTQGVIEGQEVLLQSIRVFAPDDEEGER
ELKIIGNCEIEEEIKHITPADIIASINYFFNLLHGVGTTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVIRERMSIQDTNSITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAE
LTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNK
FGFIETPYRRVDPETGRVTGHIDYLTADEEDNYVVAQANAKLDDEGNFIDTDIVSRFRGE
NTEVKRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLIPRSPLVG
TGMEHVSAKDSGAAVRAKIPGRVEYVSSRYVKVRTIQEVDGREVEGDLVTYKLLKYVRSN
QGTCYNQRPIVSVGDYVTKGEILADGPSMEKGELALGQNVLVAFMTWDGYNYEDAIIMSE
RLVKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDSRGIIRIGAEVKDG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIIHDVKIFNREDGD
ELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNP
LGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGAREEDVWETLEEAGLPRDGKTVLYD
GRTGEAFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSGDEEEIDIRGIEEEEEAQNETINVGV
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagtgcagtatggacgtcaccgccaacgcaggagttatgctcgcatc
aaagaagtgttagaacttcccgatttgatcgaaatccaaacttcctcctatcaatggttt
cttgatgagggaattcgcgaaatgtttcaagatatttcgccggttgaagattttacgggg
aaccttgtattggagtttgtggactacagtcttggcgaacccaaatacagtgtagacgag
tcaaaagagcgtgatgtaacttacgctgcgccgctgagagtgaaagtgcgtctcattaat
aaggaaacgggtgaagtgaaagaacaggaagtcttcatgggagatttccctcttatgact
gactcgggaactttcgttattaatggagccgaacgggttattgtctcgcagcttgttcgg
tcaccgagtgtctactataaccctaagtttgataagaatggcaaaaaagggttcacagca
accgtgattccaaaccgcggagcatggctggagttcgaaacggatgcgaaggatgttgtt
tatgtccggatagatcgaacacgtaaactaccaattactgtgcttttaagagcattgggg
tttgggtctgatcaagaaatcatcgatttgcttggcgaagatgagtatttacgaaacacc
cttgataaagacaacactgagggaacggaaaaggccctaatcgaaatttacgaaaggctt
cgtccgggcgaaccacctacagtggaaaacgcaaagaatcttttagaaacccgattcttt
gatcctaagcgttatgaccttgcaagcgttggacgctacaagatgaataaaaagcttcac
ataaagaatcgattatttaaccaaaaattagcggaaccattagttgatcctgaaacaggc
gagatcatcgctgaaaaaggaactcttttggatcgtcgtactttggatcgtctcttacct
atgattcaaaaatcgctcggctttaaaacctatcaaccaacacaaggtgtcattgagggg
caagaggtcctattacagtccattcgtgtttttgcacctgatgacgaagagggtgagcgc
gaactcaagatcataggtaattgcgaaattgaagaagagattaagcatattacaccagca
gatatcattgcgtctattaattatttctttaatttattgcatggtgtaggcacaacagat
gacattgaccatttagggaatcgtcgtttgcgttcagttggtgaactcttgcagaaccaa
ttccgaattggattatctcgtatggagcgcgtgattcgtgagcgtatgtccattcaagat
acgaactcgattacaccgcaagcactcattaacattcgccctgtcattgcgtctattaaa
gagttctttggtagttcacagctttctcaattcatggatcaaaccaatccgctcgctgaa
cttactcacaagagaagattgtcagcccttggaccaggcggtttgactcgtgaacgtgcg
ggtatggaagtgcgagacgttcactattcccactatggtcgtatgtgtccaatcgaaacg
ccagaaggtccaaacattggattgattaactcgctttcatcatttgccaaagtgaataag
tttgggtttattgaaacgccttatcgacgcgttgatcctgaaacaggtcgtgtgacaggt
catatcgattatttaaccgccgatgaggaagataattatgtagtggcccaggcgaacgca
aagcttgatgatgaagggaattttattgataccgatatcgtatctcgtttccgtggtgag
aacactgaggttaagagagaacgaattgattatatggatgtttcgccgaagcaggttgtg
tcggcagcgactgcttgtattccgttcttagaaaatgacgactcaaaccgtgccttaatg
ggagcgaacatgcaacgtcaagcggtaccgcttttaattcctcgttctccattagtcggt
acaggtatggaacacgtttcggctaaagattcaggggctgctgttcgtgccaaaatccca
ggtcgcgttgaatacgtatcatccagatatgtaaaagttagaaccattcaagaagtggac
ggccgggaagtagaaggtgatttagtcacttacaagctccttaaatacgtgcgttcaaac
caaggaacgtgttataaccaacgcccaatcgtctctgtcggggactatgtaacaaagggc
gaaatattggcggacggtccttcaatggaaaaaggagaacttgctcttggtcaaaacgtg
cttgttgcctttatgacatgggatggctataactatgaagatgccattatcatgagtgaa
cgtcttgtaaaagatgatgtttacacatctgttcatattgaagaatatgaatcagaagct
cgtgatactaagcttggacctgaagaaatcacaagagatattccaaacgttggtgaagat
gctcttaagaacttagacagccgcgggattattcgaattggcgcggaagttaaggatgga
gatatcttagttggtaaagtaacgccaaaaggtgtaactgaactaacagctgaagaacgt
ctcttgcatgctatctttggtgaaaaagcacgcgaagttcgtgatacatctttacgtgtg
cctcatggcggcgatgggatcattcacgatgtaaaaatctttaatcgtgaagatggcgat
gagcttcctcctggtgtgaatcaattagtgcgcgtttatatcgttcaaaagcgtaagatt
cacgaaggagataaaatggcgggccgtcacggaaacaaaggggttatctcccggattctt
cctgaagaagatatgccattcatgccagacggaactccagttgatatcatgttgaatcca
cttggtgtgccatctcgtatgaacattggtcaggtgcttgaactccacttaggaatggca
gcaagacaactaggcattcacgttgcgacgccggtatttgacggagcccgtgaggaagat
gtttgggaaactctcgaagaggctggtcttcctagagatggtaaaaccgttctttatgat
ggaagaaccggtgaagcttttgataaccgtgtctctgtgggtgtcatgtacatgattaaa
cttgctcacatggttgatgataagcttcatgcacgttcgaccggaccatactcacttgtt
acgcagcaaccattgggtggtaaagctcaatttggtgggcaacgttttggtgagatggaa
gtatgggctctcgaagcttatggtgcggcgtacacgcttcaggaaattcttacggtcaaa
tcagatgatgtcgttggtcgtgtgaagacttatgaagccattgttaaaggtgagaatgtc
cctgagcctggtgtacctgaatcatttaaagtattaatcaaagaacttcaaagtttggga
atggatgttaagattctttcaggtgatgaagaagaaatagatattcgcggcattgaagaa
gaagaagaagcacaaaacgaaaccattaatgtcggtgtttaa
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