Pseudomonas umsongensis: HGP31_00130
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Entry
HGP31_00130 CDS
T06842
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HGP31_00130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pum03400
]
HGP31_00130
Enzymes [BR:
pum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HGP31_00130
DNA repair and recombination proteins [BR:
pum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HGP31_00130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
CbiK
Motif
Other DBs
NCBI-ProteinID:
QJC76758
LinkDB
All DBs
Position
26852..27631
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AA seq
259 aa
AA seq
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MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGMNGDEDLN
QKFKLMDDFAKYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDE
IVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQILTPGLRRFVRSARLPRQ
PRFSQHAPLIVDYDWTLTI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcatcagtgtgaacgtcaatggtattcaggctgcagtcgagcgaggtttgctc
agttggctgcaggcacagaatgccgacgtcatctgcctgcaggacacccgtgcctccgcc
tttgaactggacgatccagccttccaactggatggatacttcctttatgcctgcgacgcc
gaagttcccgcccaaggcggcgtggctttgtactcgcggttgcaaccgaaggctgtcatc
agcggtctcggtttcgagacggcagaccgctacgggcgctacctgcaagcagatttcgac
aaagttagtattgcaaccctgctgcttccttccgggatgaacggcgatgaggacttgaac
cagaagttcaagctcatggacgacttcgccaagtacctggacaagcagcggcgcaaacgc
cgcgagtacatttattgtggttcgctgtatgtggcgcaacagaaactggacatcaagaac
tggcgtgacagccagcaatccccgggtttcctggcgcctgaacgcgcctggatggacgag
attgtcggcaacatgggttacgtcgatgccctgcgcgaagtcagccgtgaaggcgaccag
tacagctggtggccggataacgaacaggccgaaatgctcaacctcggctggcgcttcgat
taccagatcctgaccccgggcctgcgccgcttcgtacgcagcgcgcgcctgccacgtcag
ccacggttctcgcaacatgcgccactgatcgtggactacgactggacgctgaccatctaa
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