KEGG   Pseudomonas umsongensis: HGP31_02875
Entry
HGP31_02875       CDS       T06842                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pum  Pseudomonas umsongensis
Pathway
pum02024  Quorum sensing
pum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HGP31_02875 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HGP31_02875 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pum03019]
    HGP31_02875 (hfq)
   03036 Chromosome and associated proteins [BR:pum03036]
    HGP31_02875 (hfq)
Messenger RNA biogenesis [BR:pum03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HGP31_02875 (hfq)
Chromosome and associated proteins [BR:pum03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HGP31_02875 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QJC77283
UniProt: A0A1H2D127
LinkDB
Position
654642..654902
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATESEAGDAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtgtccatctacctggtcaacgggattaaactgcaaggtacgatcgagtctttcgac
caattcgttatcctgctgaaaaacaccgtcagccaaatggtctacaaacacgctatctct
acagtagtgccggttcgtccaattcgtctgcctagcgcaaccgaatccgaagcaggtgat
gctgagccaggtaacgcctga

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