Pseudomonas umsongensis: HGP31_02875
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Entry
HGP31_02875 CDS
T06842
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pum
Pseudomonas umsongensis
Pathway
pum02024
Quorum sensing
pum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGP31_02875 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HGP31_02875 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pum03019
]
HGP31_02875 (hfq)
03036 Chromosome and associated proteins [BR:
pum03036
]
HGP31_02875 (hfq)
Messenger RNA biogenesis [BR:
pum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HGP31_02875 (hfq)
Chromosome and associated proteins [BR:
pum03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HGP31_02875 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QJC77283
UniProt:
A0A1H2D127
LinkDB
All DBs
Position
654642..654902
Genome browser
AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATESEAGDAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtgtccatctacctggtcaacgggattaaactgcaaggtacgatcgagtctttcgac
caattcgttatcctgctgaaaaacaccgtcagccaaatggtctacaaacacgctatctct
acagtagtgccggttcgtccaattcgtctgcctagcgcaaccgaatccgaagcaggtgat
gctgagccaggtaacgcctga
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