Planctellipticum variicoloris: SH412_001127
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Entry
SH412_001127 CDS
T09866
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SH412_001127 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvar03021
]
SH412_001127 (rpoB)
03400 DNA repair and recombination proteins [BR:
pvar03400
]
SH412_001127 (rpoB)
Enzymes [BR:
pvar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SH412_001127 (rpoB)
Transcription machinery [BR:
pvar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SH412_001127 (rpoB)
DNA repair and recombination proteins [BR:
pvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SH412_001127 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WLD11040
LinkDB
All DBs
Position
complement(1440146..1443862)
Genome browser
AA seq
1238 aa
AA seq
DB search
MPVPSIRVIPVNEVRNLGALKGDFEISDLTRIQTESYFRFLQLEKEPRERKDEGLEAILR
EIFPIESYQDGKYRLEYVKYELGKPRYTPLECRQLRLTFGRPFRVWLRLVKEQPIEEEVY
LGDMPIMLGGGEFIINGAERVVVSQLHRSPGVDFVQANEPGERKSFSCRVIPERGSWIEL
NITKRETLGVRIDQSGKFSVMTFLRAMGPEFGSTPALIKLFYPVSTVKLSKEAVEKLTGK
HAAEDLIYPAGHERCGEIIVEAGHPINSALAEELAASPLKSVLIIDEVADRLALESILED
PTMSYEDALLRIYQRLRPGNPPQLEKAVDLFKEKFFDVNRYRLGRVGRFRINRKFNQDVP
DTEMTLRPDDIVNSIRYIHKLRSGEATASVDDIDNLGNRRLRTIDELAAEEIRKGFLKLR
RTVQERMSLKDVEEMSPRTLINPKSVSAAIEYFFGRGELSQVVDQTNPLATLTHERRLSA
LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFAKVDDYGFLITPYR
KVVNRKVTDEIVWCRADEESQVYIAPADTPVKDGVISDDRVMARHHNDVVWITSNEVNFI
DVAPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQGVPLLIAEPPLVGTGLEAAVAESSG
MVLRAEKSGKITYVDANVIEIDGRKHPLRKYMGLNERTCLNQKPTVVVGQKVKKGEILCD
SAATRDGELALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSIHIDEFDVEVRETKL
GREEFTRDIPNVSEKALRNLDEDGIVRIGTRVEPGDILVGKVSPKAKTELTPEEKLLHAI
FGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSEGERKKFEAELKKAEEAGAASVAE
AFKEFLKEFETAFGSKLKDSDGRDVRSVNDDKFLATYAETFHSMFEMLDIKSPQKKADCK
KAIKDFWQPVEDAIDERDRTLNTMKRGDELPSGVLQMVKVYVAQKRQISVGDKMAGRHGN
KGVISKVLPEEDMPFLEDGTPVDILLNPLGVPSRMNVGQILETHLGFACAKLGIRVKCPV
FDGPAEEEIHKLLIQAGLCDDGKSQLYDGRTGEAFEQKTTVGYIYMLKLHHLVEDKVHAR
ATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE
SMVKGENTLEAGTPASFEVLNNEIRGLCLNMQLEKTGV
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgccagttccctctattcgcgtcatcccggtcaatgaagtccgtaatctgggcgccctg
aagggtgactttgagatctcggatctgacgcgaatccagaccgagtcttacttccggttt
cttcaactggagaaggaacccagggagcgcaaggacgagggccttgaggcgatccttcgc
gaaatttttccgatcgagagctaccaggacggaaaataccgcctggaatacgtgaagtat
gagctgggcaaaccgcggtatacgccactggagtgccgccagcttcgcctgacattcggt
cgtccgttccgcgtctggctgcgactcgtcaaggagcagccgatcgaggaagaggtgtac
ctgggcgatatgccgatcatgctcggcggcggcgagttcatcatcaacggcgccgagcgc
gtggtcgtgagccagttgcatcgttccccgggcgtggactttgtccaggccaacgagccg
ggcgagcgaaagagtttttcctgccgcgtgattcccgagcgtggtagctggatcgagctg
aatatcacgaagcgtgagaccctgggggtccgcatcgatcagagcggcaaattctccgtg
atgacgttcctgcgggccatggggccggagttcggttcgacgccggcgctgatcaagctg
ttctacccggtctcgacggtgaagctgagcaaagaggccgttgagaagctgacgggcaag
cacgccgcggaggatctgatttatccggcgggccacgagcgctgcggcgagatcatcgtc
gaagcgggtcatccgatcaacagcgctcttgcggaggagctggcggcttcgcctttgaag
tcggtgctgattatcgacgaggtcgccgaccggctggctctggagagcatcctcgaagat
ccgacgatgtcctacgaggacgccctgctgcgaatctatcagcggctgcgcccggggaat
ccgccgcagctcgaaaaggccgtggatctgttcaaggagaagttctttgacgtgaaccgc
taccggctgggccgcgtgggccggttccggatcaatcggaagttcaatcaggacgtgccg
gacacggagatgacgctccgtcccgacgacatcgtcaactcgatccgctacatccacaag
ctgcggtcgggcgaagcgacggcgagcgtcgacgatatcgacaacctgggcaatcgccgg
ttgcggaccatcgacgaactggcggccgaagaaatccgcaaaggatttctgaagctccgt
cgcacggttcaggagcggatgagtctcaaagacgtcgaagagatgtcgcctcggacgctg
atcaatccgaaaagcgtgtcggcggcgatcgagtatttcttcggccgcggcgagctttcg
caggtcgtcgatcagacgaatccgctggcgacgctgacgcacgagcgccggctcagcgcc
ctgggacctggcggtttgaaccggaagcgtgcgggcttcgaagtccgcgacgtgcacatt
tcgcactatggccgaatctgtccgattgaaacgcccgaagggacgaacatcggactgatt
tcgagtctgagcatcttcgcgaaagtcgacgattacggcttcctgatcaccccctatcgc
aaagtggtgaatcggaaagtgaccgacgagatcgtctggtgccgtgcggacgaggaatcg
caggtctatatcgcgcccgccgatacgccggtcaaggatggcgtgatttcagacgatcgc
gtgatggcccgccatcacaacgacgtggtctggattacgtcgaacgaagtcaacttcatc
gacgtggccccctgccagatggtcggcgtctccgcggggttgattccgttcctggagcac
gacgacgccaaccgcgccttgatgggttcgaacatgcagcggcagggcgtgccgctgctg
attgccgagccgccgctggtgggaaccggactggaagccgccgtggcggaaagttccggc
atggttctacgggctgagaagtccggaaagatcacctatgtggacgcgaacgtcatcgag
atcgatggccggaagcatccgctccgcaaatacatggggctcaacgagcggacctgcctg
aatcagaagccgaccgtagtggtcggtcagaaggtcaagaagggcgagattctctgcgat
tccgcagcgactcgagacggcgaactggccctgggccggaacgtgctcgtggcgttcatg
tcgtgggaaggcttcaacttcgaagacgcgatcatcctgtccgagcgtctggtgaaggaa
gacgtctacacgtcgatccacatcgacgagttcgacgtggaagttcgcgagacaaagctg
ggccgcgaagagttcacccgggatattcctaacgtcagtgagaaggcgctccggaatctc
gacgaagacggaatcgtacggatcggcacccgcgtggagccgggcgacattctggtcggc
aaggtctccccgaaggcaaagacagaactgacgccggaagaaaagctgctgcatgcgatc
ttcgggcgggccggcgaggacgtgaagaacgagtcgctggaagttccgagcggcgtcgaa
ggaattgtgatccacaccgagaagttctcccgccgaatgagcctgtcggaaggcgagcgg
aagaagttcgaagcggagctgaagaaggccgaagaggccggggctgcgtcggtggccgag
gcgtttaaggagttcttgaaggaattcgagacggcgttcggcagcaagctgaaggactcg
gacggtcgggacgtgcggtcggtgaacgacgacaagttcctggcgacgtacgccgagacg
ttccacagcatgtttgagatgctcgatatcaagagtccgcagaagaaggcggactgcaag
aaggccatcaaagatttctggcagcctgtggaagacgcgatcgacgaacgcgaccgcacg
ctcaacaccatgaagcgcggcgacgagttgccgagcggcgtgctgcagatggtcaaagtc
tacgtggcgcagaagcggcagatctccgtcggcgacaaaatggccggtcgtcacgggaac
aagggtgtgatttccaaggtgctgcccgaggaagacatgcccttcctggaggacggcact
ccggtcgacatcctgctgaatccgctgggcgtgccgagccgtatgaacgtcggtcagatt
ctcgagacccacctcgggttcgcctgcgccaagctcggcatccgggtcaagtgcccggtg
ttcgacggtccggcggaagaagagattcacaagctgctgatccaggccggcctgtgcgac
gacggcaaatcgcagctttacgatggacggacgggcgaggccttcgagcagaagaccacc
gttggctacatctacatgctcaagctgcaccacctcgtcgaagacaaggtgcatgctcgt
gcgaccgggccatactcgctgatcacgcagcagccgctgggcggcaaggcgcggttcggc
ggacagcgattcggcgaaatggaagtgtgggcgctggaagcgtacggcgccgcctacatt
ctgcaggaactgctgacggtcaagagcgacgacgtcgaaggccggacgaagatttacgag
tcgatggtcaagggcgagaacactctcgaagcgggcaccccggcgagcttcgaagtgctc
aacaacgagattcgcggtctgtgcctgaacatgcagttggagaagacgggcgtctga
DBGET
integrated database retrieval system
