Pseudoalteromonas viridis: J5X90_02120
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Entry
J5X90_02120 CDS
T07232
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb02024
Quorum sensing
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_02120 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
J5X90_02120 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_02120 (hfq)
03036 Chromosome and associated proteins [BR:
pvb03036
]
J5X90_02120 (hfq)
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
J5X90_02120 (hfq)
Chromosome and associated proteins [BR:
pvb03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
J5X90_02120 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QTL35876
UniProt:
A0ABX7V4R7
LinkDB
All DBs
Position
1:complement(488762..489025)
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AA seq
87 aa
AA seq
DB search
MAKGQSLQDPFLNVLRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQNTQGNDSAENGEDGNF
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggccaatcgttacaagacccatttttgaatgtcttacgtcgtgagcgcatt
cccgtttccatctttttagttaacggtatcaaattacaaggcaagatccagtcttttgac
cagttcgtgatcttgcttgaaaacactgtaaatcaaatggtttataaacacgccatctcg
actgttgtgcctgctcgtgctgtaaatttccaaaatactcagggcaatgacagcgcagaa
aatggcgaagatggtaacttttaa
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