Pseudoalteromonas viridis: J5X90_07035
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Entry
J5X90_07035 CDS
T07232
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5X90_07035 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvb03021
]
J5X90_07035 (rpoB)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_07035 (rpoB)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5X90_07035 (rpoB)
Transcription machinery [BR:
pvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5X90_07035 (rpoB)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5X90_07035 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QTL36772
UniProt:
A0ABX7VBF7
LinkDB
All DBs
Position
1:1650055..1654080
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLQTQLESFKKFITPDADGDTGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTFSAPLRVKLRLVLMDKDAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLFVRIDRRRKLPASIILRALEFTTDEILGMFFETTAFEVTNGKVMMEL
VPSRLRGETAAFDIKDADGEVLVEQGRRITARHIKTIEKKGIDQLEVPHEYIIGRVVARN
YIDESTGEIIAEANAELSLELMAELVKAGHTKIDTLYINDVDSGAYMSETLRIDSTANRL
EALVEIYRMMRPGEPPTKEAAEALFDNLFFSDERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DDVDYLSAIEEGQFVIAQANTNLTEANQFAEELIPCRYKGESTFMPSDSIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGVVKYADASRIVVNVNEEERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVQEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEGGVLTRARDLLVRAGLSEEKIAELNAEKLLTQSLADEEQQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDEKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERIEDMMKEQRELHE
MRDFIKKAYEIGDCRQKVDIENFSDDEIRRLAHNLKGGLPIATPAFDGAREAEIKDMLEL
GGYPRSGQVTLYDGRTGDAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEES
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggacatacctttccttttgcaaacgcagttggaatcgttcaaaaagttcattaca
ccggacgctgatggtgataccggactggaagcggcattccgttctgtgttcccgatcaaa
agctactcgggcaattctgagcttcaatacgtcagctatcgtattggagagccagtattc
gatgtaaaagaatgtcaaattcgcggtgtgactttttctgctccacttcgcgtaaaactt
cgtcttgtgctaatggacaaagatgcaccaggcacagtcaaagacattaaagagcaagaa
gtttacatgggcgaaatcccgctcatgactgacacaggtacttttgttatcaatggtaca
gaacgtgttatcgtttctcagctacaccgttcacctggtgtattctttgataacgaccgt
ggtaaatcacactcgtcgggtaaagtactatataacgcacgcgtgatcccttaccgtggt
tcgtggttagactttgaattcgatgtaaaagataacctgtttgtacgtatcgaccgtcgt
cgtaaactgcctgcatcaatcatcctgcgtgcccttgagttcacgacagatgaaatcctt
ggcatgttcttcgaaaccactgcgttcgaagtaacgaacggcaaagtgatgatggagttg
gtaccatctcgactacgtggtgaaaccgctgcctttgatatcaaagatgcagacggtgaa
gtcctggttgagcagggtcgtcgtatcacagcccgtcatataaaaacaatcgagaaaaag
ggcattgaccagttagaagtaccgcatgagtacatcattggtcgtgtggttgcgcgaaat
tacatcgatgagtcaaccggtgagatcattgcagaagcaaatgctgagctatctctggag
ttgatggctgagctggttaaagctggtcatactaaaatcgataccctgtatatcaacgac
gtagacagcggtgcctacatgtcggaaacgctgcgcattgacagcacagcaaaccgtctt
gaagcactggtagaaatctaccgtatgatgcgcccgggtgagccaccaacaaaagaagca
gcagaagccttgtttgacaatctgttcttctctgacgagcgttatgacttgtcaacggtt
ggtcgtatgaagttcaacagccgtgttggttatgacactgacacaggcccaggcacgctg
agcaaagaagacattgttagcgtgatgaaggtgttgatcgacatccgtaacggtaaaggc
gatgtggacgatatcgaccacttaggtaaccgtcgtatccgttctgtaggtgaaatggca
gagaaccagttccgcgtaggtctggtacgtgttgagcgtgctgtacgtgagcgtctgagc
ttaggtgatctggacaacgtaatgcctcaggatctgattaacgcgaagccaatttctgct
gccgttaaagaattctttggttcttcacagctgtctcagttcatggaccaaaacaacccg
ttgtcagaagtaacgcacaagcgtcgtatttctgcacttggtccgggtggtctgacacgt
gaacgtgctggcttcgaggttcgagacgtacacgtaacgcactacggtcgtgtttgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactcattgtctacgtacgcacgt
actaacgattatggtttcctggaaaccccatatcgtaaagtggttgacggcgtagtaacc
gatgacgttgattacctgtctgcaattgaagaaggtcagttcgtaatcgcacaggcgaac
actaacctgactgaagcaaaccagtttgcagaagaactgatcccatgtcgttacaaaggt
gaatcaacctttatgccaagcgacagcatccagtatatggatgtatctccacagcaggtt
atctctgtggcagcggcacttatcccattccttgaacacgatgatgcgaaccgtgcattg
atgggatcgaacatgcaacgtcaggctgtaccaacactgcgcgcagataagccgctggta
ggtacaggtatcgagcgtacgctggcaaaagactctggtgtaaccattgttgccaagcgt
ggcggtgtggtgaagtatgctgatgcgagccgtatcgttgttaacgtgaacgaagaagag
cgcgtacctggtgaagcgggtatcgacatctacaacctgaccaaatacacccgttccaac
cagaacacctgtattaaccaaaaaccaacttgtatggtaggtgagccggttgtccgtggt
gacgtactggcggatggtccttcgactgacctgggcgacctggctcttggtcaaaacctg
cgcgtggcattcatgccgtggaatggttacaacttcgaggattcaatcctactgtcagag
cgcgttgttcaggaagatcgtctaactacgatccacatccaggaactacagtgtattgca
cgtgatactaagcttggtccagaagagatcacggctgatatcccgaacgtgggtgagtct
gcgctaggtaagctggacgaatcaggtgttgtatacatcggtgctgaagtaaaaggcggc
gatatcctggttggtaaagtaacaccgaaaggcgaaactcagctgacgccagaagagaag
ctactacgtgctatcttcggtgaaaaagcgtctgatgtaaaagacagctcactgcgtgta
cctaactctgtttctggtacggttatcgacgttcaggtctttacccgtgatggcgtagag
aaagacaagcgtgcgctggaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtatccttgaaggcggtgtactgacacgtgcgcgtgatctgctggta
cgtgctggtctgagcgaagagaagatcgctgagctgaacgctgaaaaactactgacgcaa
agcctggctgacgaagagcagcaagctgaactagagcaactggctgcgcagtacgacgag
ctgaaagctgaatacgataagaagttcgagaacaagcgtcgcaagatcactcaaggtgat
gacttggcgcctggtgtactgaagatcgttaaggtttatctggctgttaaacgtcgcatc
caaccgggtgataagatggcgggtcgtcacggtaacaagggtgtaatctcgactatcgtg
cctgttgaagacatgccttacgacgaaaaaggtcgtacggtagacatcgttctgaaccca
ctgggtgtaccatcgcggatgaacatcggtcagatcctggaaactcacatgggtcttgct
gcacgcggtatcggtgagcgcatcgaagacatgatgaaagagcaacgtgaacttcacgaa
atgcgcgacttcatcaagaaagcttacgaaatcggtgattgccgtcagaaagtcgatatt
gaaaacttctctgatgatgagatccgtcgtttggcgcacaacctgaaaggcggtctgcca
atcgcaacacctgcgtttgacggtgcacgcgaagctgaaatcaaagacatgctagagctg
ggtggttatccaagaagcggtcaggtaaccctgtacgatggtcgtaccggtgacgcattc
gagcgtcaggtaacggttggctacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgcacgttctaccggttcttacagcctggttactcagcagccgctgggtggt
aaggcacagttcggtggtcagcgtttcggtgagatggaggtatgggcacttgaagcatac
ggtgctgcctacacgctacaggaaatgctgacagttaagtcggatgacgtaaatggtcgt
actaagatgtataagaacatcgtagacggcaaccataagatggagccgggcatgccggag
tcgttcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgaattggaagaa
agttga
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