Providencia vermicola: G3341_01715
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Entry
G3341_01715 CDS
T06449
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvc
Providencia vermicola
Pathway
pvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3341_01715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvc03021
]
G3341_01715 (rpoC)
03400 DNA repair and recombination proteins [BR:
pvc03400
]
G3341_01715 (rpoC)
Enzymes [BR:
pvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3341_01715 (rpoC)
Transcription machinery [BR:
pvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3341_01715 (rpoC)
DNA repair and recombination proteins [BR:
pvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3341_01715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
QIC14500
LinkDB
All DBs
Position
392963..397183
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLIKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLAGPKEAERVYRSG
HASLHARVKVRITEEVKDGEGNITINTSMVDTTVGRAILWMIVPKGLPYSLVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDILIPGTADILVPRNTLLHEKWCDLLEENSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNPGTLKL
VNAKFVTNSEGKLVITSRNTELRLIDEFGRTKESYKVPYGAHLTKGDGAAVTGGETVANW
DPHTMPVVSEVSGIIRFSDMLDGQTMTRQTDELTGLSSIVVLDTAERTSGGKDLRPALRV
VDANGNDVLIPNTDMPAQYFLPGKAIVQLDDGIAINVGDTLARIPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPMDGSDPYEEMIPKWRQLNVFE
GEIVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIADAGSSEFLEGEQVEYSRVKVSNRKLELDGKIPAKFDRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQDRIRRRHLNDVVE
APQVSADEATANLAELLNAGFSSDNN
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttaattaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgcctgatatgatccgttcatggtcattcggtgaagtgaaaaag
ccagaaaccattaactaccgtacgttcaagcctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactacgaatgtctgtgcggtaagtacaaacgtttaaaacac
cgtggtgtgatttgtgagaaatgtggcgttgaagtcacccagactaaagttcgtcgtgag
cgcatgggtcatattgaacttgcttctccgacagctcatatctggttcttaaaatcattg
ccatcccgtatcggtttgctacttgatatgcctttgcgtgatatcgagcgtgttctgtac
tttgaatcctacgtggttgttgaaggtggtatgactagccttgaacgctcacagattctg
acagaagagcaatacttagatgcgctggaagagttcggtgacgaatttgacgcgaaaatg
ggtgcggaagcaatccaaggtctgctgaaaaacctcgatcttgagaacgagtgtgaaacg
ttacgtgaagagttgaacgaaacgaactctgaaactaaacgtaagaagctgactaagcgt
attaaactgttagaagcatttattcagtctggtaacaaaccagaatggatgatcttgaat
gttctgccagttctaccacctgatctgcgtccattagttccactcgacggtggccgtttt
gcaacatcggatctgaacgatctttaccgtcgtgtgatcaaccgtaacaaccgtctgaaa
cgtcttctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgttacaa
gaagcggtcgatgctctgttagataacggtcgtcgcggtcgtgcaattaccggttctaat
aaacgtcctctgaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgcttggtaagcgtgttgactactcaggtcgttcggttatcactgtcggtccatac
ctgcgtctgcatcagtgtggtctgcctaagaaaatggctcttgagttattcaaaccattc
atctatggcaaattagaactccgtggtctggcaacaaccatcaaagctgcgaagaaaatg
gttgagcgtgaagaagcggtagtatgggatatcttggatgaagttatccgtgaacaccca
gttatgctgaaccgtgcgccaacacttcaccgtttgggtatccaagcctttgaacctatt
ttgatcgaaggtaaagcgatccagttgcaccctctggtgtgtgcggcatataacgccgac
ttcgatggtgaccaaatggcggtacacgttcctctaactctggaagctcagttagaagcg
cgtgcgttgatgatgtcaaccaacaacatcctgtcaccagcgagtggtgagcctatcatc
gttccttcacaggacgttgtattgggtctctattacatgactcgtgactgtgtaaacgcg
aaaggcgaagggatggttctggcaggccctaaagaagctgagcgtgtttaccgttctggc
catgcttcactgcatgcccgtgttaaagtccgtatcactgaagaagtgaaagacggtgaa
ggtaacattacgattaacaccagtatggttgatactactgttggtcgtgcaattctgtgg
atgatcgtgccgaaaggtctgccttactcgctggttaaccaagcgttaggtaaaaaagcg
atctctaaaatgctgaacacttgttaccgtgttctgggtctgaaacctacggttattttt
gctgaccaaatcatgtataccggttttgcctatgcggcacgttctggtgcatcggttggt
atcgacgatatggttattcctgagaaaaaagcagggatcatcgccgaagccgaagcagaa
gttgcagaaattcaggaacagttccagtctggtctggtgacagcaggcgaacgttacaac
aaagttatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggaaaac
ctgtctactgaaacggtgattaaccgcgacggtgaagaagaacagcaggtttctttcaac
agtatctttatgatggccgactccggtgctcgtggttctgctgctcagattcgtcagcta
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacaccaatcacg
gcaaacttccgtgaaggtctgaacgttctccagtactttatttctacgcacggtgctcgt
aaaggtcttgcggatacggcattgaaaacagcgaactccggttatctgactcgtcgtctc
gttgacgttgctcaggacttggtggtgactgaagacgactgtggtacacacgaaggtatc
ttgatgactccggttattgagggtggtgatgttaaagaaccactgcgtgagcgtgtattg
ggtcgtgtgacggcagaagatattctgatcccaggtactgcggacattctggttccacgt
aatacgttgctacacgaaaaatggtgtgacctgttagaagaaaattctgtcgacagcgtt
aaagtccgttcagtcgttagctgtgaaactgacttcggtgtgtgtgctcactgttatggt
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagctatcggggttatcgcggca
cagtcaatcggtgaaccaggtacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagcatccaagttcgtaacccaggtacactaaaactg
gttaacgcgaaatttgtgactaactcagaaggcaaactggttattacttcacgtaatacc
gaattgcgcctgattgatgagttcggtcgtactaaagagagctataaagtaccttacggt
gcgcacctgactaaaggcgatggcgcggcagttactggcggtgaaaccgttgctaactgg
gatccacataccatgccagttgtcagtgaagtatccggtattattcgcttctcagacatg
cttgatggccaaacaatgacgcgtcagacggatgaattaaccggtctgtcttcaatcgtt
gttctggatacagcagagcgtacgagtggtggtaaagatttacgtccagcacttcgtgtt
gttgatgcgaatggtaacgatgttctgatccctaacaccgacatgcctgctcagtatttc
ttaccaggtaaggcaattgttcagttagatgatggcatcgctatcaacgtcggtgatacc
ttagcacgtattccacaagaatctgtgggaactaaagatatcacgggtggtctacctcgc
gttgctgacctgtttgaagcgcgtcgtccgaaagagccagctattttggctgagatcagc
ggtattgtttccttcggtaaagagaccaaaggtaaacgtcgtctggtgattacaccgatg
gatggttctgatccgtatgaagagatgatccctaaatggcgtcagctcaacgtatttgaa
ggtgagatcgttgaacgcggtgatgtaatttctgatggccctgagtcgccacatgatatc
ttgcgtctgcgtggtgtacatgcagtgacacgttatatcactaacgaagttcaggaagtt
taccgtttacaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaggtgactattgctgatgcgggaagctctgagttccttgaaggcgagcaggtc
gagtactcacgtgttaaagtttctaaccgtaaacttgagctggatggtaaaatcccagct
aagttcgatcgcgacctattgggtatcacgaaggcatctctggcaacagaatccttcatc
tcagcagcatcgttccaagaaacaacacgcgtactgacagaagcagccgttgcaggtaaa
cgcgacgaactgcgtggtctgaaagaaaacgttattgtgggtcgtttgatcccagcaggt
actggttttgcgtatcaccaagaccgtatccgtcgtcgtcatctgaacgatgttgtggaa
gctccacaagttagtgcggatgaagcaacggctaacttggctgaactgttaaatgcagga
ttcagcagcgataacaattaa
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