KEGG   Panicum virgatum (switchgrass): 120640223
Entry
120640223         CDS       T07260                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120640223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120640223
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120640223
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     120640223
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR41 Beta-prop_EML_2 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_SCAP DUF3418
Other DBs
NCBI-GeneID: 120640223
NCBI-ProteinID: XP_039772015
LinkDB
Position
1K:complement(49381652..49389895)
AA seq 1351 aa
MASPTGNPNPNPPFELGKLFRPPNPMPTATAAPIFPGAAGGPAGPPPPSGPYSYPPVTPP
FHRGPYLHYPQDPHAMARPVVSFPMPNPNLNPNPSANPNAAVPDPNPGVRLMQLLGNSGP
TQLETAVSMPPPTSEFTQPQPLPAMPSAPPARMLSSTSSKVPRGRLLGGGERAVHDIDSR
LPGESHPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLR
GHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDEENKPQITGKIEIAIQIVGDVE
AYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGKGRDFAVEEPVKCHLEKLIDGVRLVGK
HDGDVTDLSISQWMSTRLASGSKDGTVKIWDDRKPVPLSILTPHDGQAVYSVAFLTAPER
PNHINLITAGPLNREIKIWASTNEDGWLLPSDSESWNCTQTLELISSLEPRVEEAFFNQV
AVLPQASLILLANAKKNAIYAVHVEYGPYPASTRLDYIADFTVAMPILSLTGTHESQPDG
EQVVQVYCVQTMAIQQYGLELSLCSPPTADTIGFGRDPAISRVYEAPPEVAGTESSTTTT
KPPAVDQSAGIAATYSPIVASVNSEVVISCYLSAEFDPKPSAPPLAYSEGDGSVHLPSAP
LASKTEVPVSGAAPGTRDIDQSAFDYTTNRNMERDALKRQDTPMPMRKDVLGKGELRDGH
SDVAMLPNPRLMFQVGGNATHLVTPSEIISGTLSSTENNDASKSDGGKIQDVSSRSSRIA
EVEPKHIDESKPDQNSGLETVKETQIVCENMEKTRSLEQTVEMISERSVTTDKYSVEESE
LPSDKPTLDHTGVANENVIKKSVEMPEKSDYSSASGEQSSSYTKEEKVLHPQTSGSGQPS
PPVSAFNSTESHEPLSSAYPPISSFPEVAATQGMLQQLIGMQKDVEKQLSTLIPASVAKE
SKKLETSLGRSMEKSIKAHIDAFWVRLQEENTKREKADRERMQQLVTLITNSINKDIPAN
LEKSLKKEISSLGPVVARAITPIIEKCLASAVSDSVQKGVGDKVCNQLDKSISGKLEATL
ARQIQMQFHTSVKQALQDALRTSFESLLVPAFEQSCKTMFEQVDGAFQKGMSEHTVAIQQ
QVETAHTPLALTLKETINSASSITQSFSSELLDGQRKLLALVASGNVKAHNTNSLQPVNG
PMGGPQEVEAPLDPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALLAMVP
LPLNQGVLLALLQQLAVDINNETSRKVQWMTDVAMAINPADPMIAVHVRPIFEQVYSQLA
HQRALPTTSTSDGTSIRVIMHVINSVLLSYK
NT seq 4056 nt   +upstreamnt  +downstreamnt
atggcgtctcccacaggaaaccctaaccccaatccaccattcgagctggggaagctcttc
aggccgccgaaccccatgcccaccgccaccgcggcccctatcttccccggcgccgccgga
ggccccgcaggcccgccgccgccgtccggcccctactcctaccctccggtgaccccgccc
ttccaccgcggaccctacctgcactacccgcaggacccccacgccatggcccgccccgtc
gtctccttccccatgccaaacccaaacctcaaccccaacccgagcgcaaaccccaacgcc
gccgtcccggaccccaaccccggcgtgcgcctcatgcaactgctcggaaactccgggcca
acccaactcgagaccgctgtctccatgcccccgccgacgtcggagttcacgcagccgcag
ccgctcccggcgatgccgtccgcgccaccggcgaggatgctgagcagcaccagcagcaag
gtgcccagggggcggttgcttggcggtggggaacgagcggtgcacgatattgactcgagg
ctgcctggggagtcgcatccaccacagctggaggtgacaccgatcaccaaatacacgtcg
gatccggggctcgtgctgggcaggcagatcgcggtgaaccgaacgtacatcgtgtatggg
ctcaagctcgggaacatccgtgtgctgaacatcaacaccgccctccgctcactccttcga
ggccacacacagagggtgacggacatggctttctttgctgaggatgtccatcgtttggca
agcgcgagcgtagatgggcggatatatgtgtggaggattgatgaggggcctgatgaggaa
aataaaccacaaataactggaaagattgaaattgccatccaaattgtaggcgatgttgaa
gcttaccatccaaggatatgttggcactcacataagcaagagattctgtttgttggaatt
ggaaactgtgtgttgagaatagacacaactaaagtgggaaaaggaagagactttgctgtg
gaagaacctgttaaatgtcatcttgagaaacttattgatggtgttcgcttagttggtaag
catgacggtgatgtgacagatttgtccatttctcaatggatgagtacccgcttggcctca
ggatcgaaggatggcacggtaaagatctgggatgatcgcaaaccagttcctttgtccatt
ctgacgccacatgacggtcaggctgtttactcagtcgcttttcttacagcacctgagcgg
ccaaatcatataaatctaattacagcgggtcctctgaaccgagaaattaaaatttgggct
tctactaatgaagatggttggttgttgccaagcgattctgagagttggaactgtacgcag
accttggaacttattagttctctggagcctagagtggaggaggcattttttaaccaggtt
gcagtgctacctcaagcgagtctgattttgcttgcaaatgctaaaaagaatgctatttat
gctgtacatgttgagtatggaccatatcctgcctctactcgcttggactatatagcagat
ttcacagttgcaatgcctattttaagcctcactgggacacatgaaagccaacctgatggt
gaacaagttgttcaagtctattgtgtccaaacaatggccattcagcaatacggattagag
ttatcactctgttcgcctcctacagctgatactattgggtttggaagagatccagctatt
tcccgtgtttatgaggcacctccggaagtggcaggaacagagtcgtctacaacgacgact
aaaccaccggctgttgaccagtctgcaggtattgcagctacatattctcctatagttgct
tcagttaattcagaagtagttatttcttgttatttatctgcagagtttgatccaaaacca
tcagctccaccgcttgcatactctgaaggtgatggttctgtgcatctcccatctgcacct
cttgcatcaaagacggaggttcccgtatcaggagcagcacctggaactcgtgatatagat
caatcagcttttgactatacaacaaacaggaacatggagcgtgatgctttgaaaaggcaa
gatacgcccatgcccatgagaaaggatgtcttgggaaagggtgagctaagagatggtcac
agtgatgttgcaatgcttccaaatccccgtttgatgtttcaggttggagggaatgctaca
cacttggttactccatctgaaattatatcgggcactctctcatctactgaaaacaatgat
gcctctaaatctgatggaggaaaaattcaagatgtttccagtagaagctctcggattgca
gaagtggaaccaaaacatattgatgagagtaagccagatcaaaattcaggacttgaaact
gtcaaggaaactcaaattgtttgtgagaatatggagaaaactcgttctttggagcaaact
gttgagatgatcagtgagcgctcagtgacaactgacaagtacagtgtggaagaatcagag
ttgccatctgataagccgacgttggaccatactggcgttgctaatgaaaatgtgattaaa
aagtctgtggaaatgccagagaaaagtgattactcctctgcttccggggagcaatcatct
tcgtatacaaaggaggagaaagttttgcaccctcaaacatctggttctggccagccatct
cctcctgttagtgctttcaactcaactgagtcacatgagcctttgagctccgcatatcct
cctatcagctccttcccagaagttgctgccacccaagggatgctgcaacagctcataggg
atgcagaaggacgtggaaaagcaattgagtactttgattcctgcctcagtggcaaaggaa
agcaaaaaactcgagacatcattagggcgcagcatggagaaatctatcaaggctcacatt
gacgccttttgggttcgtctccaggaagaaaacactaagcgtgaaaaggctgacagagaa
cgaatgcagcaattggttactctcattacaaactcgataaacaaggacattcctgctaat
ctggagaagtcacttaagaaagagatctcgtcacttgggcctgttgttgctcgagcaatt
acccctattattgagaagtgcctagcctctgcggtttctgattcagttcagaaaggggtg
ggtgacaaggtgtgcaatcagctggataaatctattagtgggaaacttgaagctacactt
gccaggcaaatccaaatgcagttccatacatctgtaaaacaggctcttcaggatgctttg
cgcactagctttgaatcattgcttgttccagcatttgaacaatcatgcaagacaatgttt
gagcaagtagatggtgcatttcagaaaggaatgtctgagcacacagttgctattcagcag
caagttgagacagcacatactccattagcgttaacattaaaggagaccatcaattctgca
tcatcaatcacccagagtttttcgtcagagttacttgatggccagcgcaagctattggca
cttgttgcttctgggaacgtcaaggcacataataccaattctttgcaacccgttaatggt
cctatgggtggcccccaagaggttgaggctccattagatccgatgaaagagctgggcagg
ctgatatctgaacgcaagtttgacgaggcatttacaatggccctacaaaggagtgatgtt
tccatagtatcgtggctatgctctcaggttgatttgcgtgcattattggcaatggtccca
ctcccacttaaccagggggttctcttggccctactgcagcagctagcagttgacataaac
aacgagacatcacgaaaagttcaatggatgacagatgttgccatggcaatcaatccagca
gacccgatgattgcggtgcatgtgcgacccatctttgagcaagtctacagtcagttggcc
caccagcgggcactccccacgacgagcacatcagatggcaccagcatccgcgtgataatg
catgtaattaactcggttctgcttagctataagtga

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