Panicum virgatum (switchgrass): 120642398
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Entry
120642398 CDS
T07260
Name
(RefSeq) endoglucanase 12-like
KO
K01179
endoglucanase [EC:
3.2.1.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120642398
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.4 cellulase
120642398
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_9
Motif
Other DBs
NCBI-GeneID:
120642398
NCBI-ProteinID:
XP_039774840
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Position
7K:38035545..38038606
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AA seq
630 aa
AA seq
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MYSANHWGGSFEIATDGASEDDDSGNMDLDPGAVSAARQHRHELDETQQGWLLGPPAAEK
KNRHVDLGCVVVKRKVLWWAFWGLAAGFVIVGLPVIVSKSIPRRAPRPPPPDQYAEALRK
ALLFFNAQKSGRLPRSNGIPWRGDSGLKDGSDAADVKGGLVGGYYDAGDNIKFHFPMAFS
MTLLSWSLVEYSAKYKAVGEYDHVRELIRWGTDYLLRTFNSSASTIGHVYAQVGAAKING
RTPDDHYCWNRPEDMAYPRPSLAVSSAPDLGGEIAAALAAASIAFRDDDAYSRKLVHGAA
TMYDFATRGSASDQQQPTYSGHRPEIEPFYNSTSYWDEHVWGAAWMYYATGNSSYIATAT
APGLAARARAFDDILDLSVFSWDNKLPGAGLLLSRLRMFLNPGYPYEQSLAGYHTAAGLG
MCKCFRRFAAFNFTGGGLALFNHGRGQPLQYAVANAFLAALYADYLEAVNVPGWYCGPNF
MAAGDLRAFARSQLDYILGDNPRKMSYVVGYGGRYPRHVHHRGASTPRNRGKYSCTGGRR
WRDTKKADPNVLTGAMVGGPDRHDRFNDSRMAFGQTEPTLVGNAGLVAALVAVTSSGGAV
GVGAVDKNSMFSAVPPMFPATPPPPPAWKP
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtactcggcgaaccactggggcgggtcgttcgagatcgccaccgacggggcgtcggag
gacgacgacagcgggaacatggacctcgaccccggcgcggtgtcggcggcgcggcagcac
cggcacgagctggacgagacgcagcagggctggctgctgggcccgccggcggccgagaag
aagaaccggcacgtcgacctcggctgcgtcgtcgtcaagcgcaaggtcctgtggtgggcg
ttctggggcctcgccgccggcttcgtcatcgtcggcctccccgtcatcgtctccaagtcc
atcccccgcagggctccccgcccgccgccgccggaccagtacgccgaggcgctgcgcaag
gcgctcctcttcttcaacgcccagaaatccggccggcttccgaggagcaacggcatcccg
tggcgcggggactctggtctgaaggacggctccgacgccgcggacgtcaagggcggcctc
gtcggcggctactacgacgccggcgacaacatcaagttccacttcccgatggccttctcc
atgacgctgctcagctggtcgctggtcgagtatagcgccaagtacaaggccgtcggggag
tacgaccatgtcagggagctcatcaggtggggcactgactatctgcttcgcaccttcaac
tcctccgcttccaccatcggccatgtctacgctcaggtgggtgctgcaaagatcaatggc
aggacgccggacgatcattactgctggaaccggcccgaggacatggcgtaccctcgcccc
tccctggcggtgagctcggcccccgacctcggcggcgagatcgccgcggccctggcggcc
gcctccatcgcgttccgcgacgacgacgcctactccaggaagctcgtccacggcgcggcc
accatgtacgacttcgccacgcgcggctcggcgagcgaccagcagcaacccacctactcc
ggccaccggccggagatcgagcccttctacaactccacaagctactgggacgagcacgtc
tggggcgcggcgtggatgtactacgccacgggcaacagcagctacatcgccaccgccacc
gccccggggctcgccgcgcgcgccagggccttcgacgacatcctcgacctctccgtgttc
agctgggacaacaagctccccggcgccggcctgctcctgtcgcggctgcgcatgttcctc
aaccccggctacccctacgagcagtcgctcgccggctaccacacggccgccggcctgggc
atgtgcaagtgcttccggcgcttcgccgccttcaacttcaccgggggcggcctggcgctc
ttcaaccacggccggggccagccgctgcagtacgccgtcgccaacgccttcctcgccgcg
ctctacgccgactacctggaggcagtcaacgtccccggctggtactgcggccccaacttc
atggccgccggcgacctccgggcgttcgccaggtcccagctcgactacattctcggcgac
aacccgaggaagatgagctacgtggtgggctacggcggcaggtacccgcggcacgtgcac
caccggggcgcgtcgacgccgcgtaaccgcggcaagtactcgtgcaccggcgggcgcagg
tggcgcgacaccaagaaggcggacccgaacgtgctcacgggcgccatggtgggcgggccg
gaccgccacgacaggttcaacgactcgcgcatggccttcgggcagaccgagccgacgctg
gtgggaaacgccgggctcgtggccgcgctggtggccgtcaccagcagcggcggcgccgtc
ggcgtcggcgccgtcgacaagaacagcatgttctctgccgtgccgccgatgttcccggcc
acgccgccaccgccgcccgcgtggaagccgtga
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