Panicum virgatum (switchgrass): 120644289
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Entry
120644289 CDS
T07260
Name
(RefSeq) protein transport protein SEC23-like
KO
K14006
protein transport protein SEC23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120644289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120644289
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120644289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
TopoV_HHH
Vps36-NZF-N
DarA_N
Motif
Other DBs
NCBI-GeneID:
120644289
NCBI-ProteinID:
XP_039776821
LinkDB
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Position
8K:26199386..26206158
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AA seq
791 aa
AA seq
DB search
MSAADPSAAPPAAAADPDGPDAVRLTWNAWPRSKVEASRCVVPLAATVSPARVPDPSAAS
PPPLPYPPLRCKPPCSALLNPFARVDFAAKIWICPLCFSRNHFPPHYAAISESNVPAELF
PQCSTVEYIVGGAPGAPGAAGAPPPPVFLFVIDTCVIEEELEYVKMAMRKAVALLPEHAL
VGLVTFGTQVHLHELGFSDLSKIYVFRGTKEISKEQILDQLGLAGAGRPGFPKMPQQPGG
PQVNGMHPAATAGVNRFLLPMSECECTLSTLLDELQPDQWPVEAGNRAIRCTGVALSVAA
GLLGACMPGTGARIIALLGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPHFQKAVKFYD
GLAKQLVSQGHVLDVFASALDQVGLAEMKVAIERTGGLVVLSESFGHSVFKDSFKRIFEG
GEQSLSLSFNGTIEINCSKDIKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDR
NTSLTVFFDVSPSERSSQPGHQNPHLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTE
ELVEGFDQETAAVVLARYISLKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPTSFSLH
SNFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRETVTNSVAMIQPSLISFSFDSP
PSPVFLDVASIAADRILLLDAYFSVVIFHGMTIAQWRNMGYQNQPEHEQFAQLLQAPHEE
AQMIIKGRFPVPRLVVCDQHGSQARFLLAKLNPSATYNSAHDVAPGSDIIFTDDVSFQVF
CEHLQRLAVQS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgccgacccatccgcggcgccgcccgcggccgccgccgacccggacggcccc
gacgccgtccgcctcacctggaacgcctggccgcgctccaaggtcgaggccagccgctgc
gttgtgccgctcgccgccaccgtctcgcccgcccgcgtcccggacccctccgccgcgtcc
ccgccgccgctcccctaccccccgctccgctgcaagccgccctgctcggcactcctcaac
cccttcgcgcgcgtcgacttcgccgccaagatctggatctgcccgctctgcttctcccgg
aaccacttccctccgcactacgccgccatctccgagtccaacgtccccgccgagctcttc
ccgcagtgctccaccgtcgagtacatcgtcggtggcgcccctggcgctcccggggccgcc
ggcgcccctccgccgcccgtattcctcttcgtcatcgacacatgcgtcattgaggaggag
ctggagtacgtcaagatggccatgcggaaggccgtcgcgctcctacccgagcacgcgctc
gtcggcctcgttaccttcggcacgcaggtgcacctgcacgagcttggattctctgatctc
agcaagatctacgtcttccggggtaccaaggagatctccaaggagcaaattttggatcag
ctggggctggctggtgccggccgtccgggcttccccaagatgccgcagcagccaggtggg
ccacaggtgaacgggatgcatccggcagcaacggccggggtgaataggttcctgctcccg
atgtcggagtgcgagtgcacactcagcacgttgttggacgagttgcagcccgatcaatgg
ccagtggaggctgggaaccgtgcaatccggtgcacgggtgttgccctgagcgtggccgct
gggttgcttggtgcttgcatgcctgggacaggtgctaggatcattgcattgctcggtggg
ccatgtactgaaggccctggaatgattgtttccaaggatttgtcggagccagttagatcg
cataaggatcttgacaaggatgcggctcctcacttccagaaagctgtcaaattttatgat
ggtcttgccaaacagttggtcagtcaaggccatgttttagatgtttttgcatctgctctt
gatcaggttggactagctgagatgaaggttgctattgagagaacaggtggccttgttgtc
ttatctgaaagttttgggcactccgtattcaaggattctttcaaacgcatttttgaggga
ggtgaacagtctctaagtctttcattcaacggaacaattgaaataaactgttcaaaagac
attaaggtccaaggtattattggaccatgtacatctttggagaagaaaggagctttgtgt
gctgacacagttgtcggtcaaggaaatacaacggcatggaaaatgtgtggtctcgatagg
aatacttcattgactgtgttttttgatgtctcacctagtgagcgatcgagccaaccagga
catcaaaatccgcatttgtatatacaatttgtaacaagttaccaacacccagaaggccaa
atgaggataagagttactaccatatgcaggaaatgggtggatggctccactaatactgag
gaattagtcgaaggttttgaccaggaaactgcagctgttgtgttggcaagatatatctct
ttgaaaatggaaatggaggaagagttcgatgcaacacggtggcttgatagatctctgata
cggctttgttcacgatttggggattatcgaaaggatgaccctacttcatttagcttgcat
tcaaatttctcattgttccctcaatttatgtttaatctccggcgttcacaatttgtccag
gttttcaataatagtccagatgagacagcttatttccggatgttactcaaccgtgaaact
gtcaccaactccgttgcaatgatccagccttcattaatatcattttcttttgattcacct
ccttcgccagtattccttgatgtggcatcaatagcagcagaccggatactgcttcttgat
gcatactttagtgttgtcatcttccatggcatgacaattgctcagtggcgaaacatgggc
taccagaaccaacctgagcatgagcaatttgcacaactattacaagcaccccatgaggag
gcgcagatgataataaaaggccgatttccagttccaagactagttgtatgcgaccaacat
ggctcgcaggcaaggttcttattagctaagctgaatccgtcggcgacatataactcagct
cacgatgttgcccctggttctgacatcattttcactgatgatgttagcttccaggtcttc
tgtgagcaccttcaaaggctggctgttcagtcttga
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