Panicum virgatum (switchgrass): 120644640
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Entry
120644640 CDS
T07260
Name
(RefSeq) adagio-like protein 3 isoform X1
KO
K12116
flavin-binding kelch repeat F-box protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120644640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120644640
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120644640
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Kelch_4
Kelch_3
Beta-prop_ATRN-LZTR1
Kelch_2
Kelch_5
PAS_9
Kelch_1
Kelch_6
PAS_3
PAS
NANM
F-box-like
F-box
PAS_4
p6
PAS_8
Motif
Other DBs
NCBI-GeneID:
120644640
NCBI-ProteinID:
XP_039777253
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Position
8K:complement(39920109..39930618)
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AA seq
607 aa
AA seq
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MFDDGAAGDRGAVAVKRMRLWEEGWAWGPPAPAAGVGEQRAAAIVVADAAEADFPVIYVN
AAFEAATGYRAHEVLGRNCRFLQFRDPRAQRRHPLVDPMIVSEIRRCLNEGIEFQGELLN
FRKDGAPLYNRLRLIPMHGDDGSVTHVIGIQLFSEANIDLSNISYPVYKQQSNHRPSIQD
LNSASHEHTPKIQSSDYCGILQLSDEVLAHNILSRLSPRDVASIGSVCTRMHELTKNDHL
RKMVCQNAWGRDVTVRLEMSTKMLRWGRLARELTTLEAASWRKFTVGGRVEPSRCNFSAC
AVGNRLVLFGGEGVNMQPMDDTFVLNLEAARPEWRRVKVSASPPGRWGHTLSWLNGSWLV
VFGGCGQQGLLNDVFVLDLDAQQPTWREVASEGPPLPRSWHSSCTLDGSKLVVSDGCTES
GVLLSDTFLFDLTKEKPAWREIPTSWSPPSRLGHTMSVYGATKLFMYGGLAKSGSLRLRS
SDAYTMDVGEDSPQWRQLATTGFPNVSPPPRLDHVSVSLPCGRIIIFGGSIAGLHSPAQL
FLIDPAEEKPTWRILNVPGQPPKFAWGHSTCVVGGTRVLVMGGHTGEEWILNELHELCLA
SRPDEDE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgacggcgcggcgggggatcgcggcgcggtggcggtgaagcggatgagactg
tgggaggaggggtgggcgtgggggccgccggcgccggcggcgggggtcggggagcagcgg
gccgcggcgatcgtggtggccgacgcggcggaggccgacttccccgtcatctacgtcaac
gccgccttcgaggccgccacggggtaccgcgcccacgaggtgctcgggcgcaactgccgt
ttcctgcaatttcgggatccacgtgcgcaaaggcggcatccccttgttgatcccatgatt
gtttcagagattcggcgatgtctcaatgaggggattgaattccaaggcgagctgctcaat
ttccggaaggatggtgctccactatacaacagattaaggctcattcctatgcatggggat
gatggctctgtgacacatgttattgggatccagctattctctgaggcaaacattgatctc
agcaacatatcatatccagtgtataaacaacagtctaaccacaggcctagcattcaagat
ctgaactcagcttctcatgaacatactccaaaaatccagagttcagactactgtggtatc
ctccaattgtcagacgaagttcttgcacacaacattttatctcgcctgtcgccaagagat
gtcgcatcgattggatcagtctgtaccagaatgcatgaactaaccaagaatgatcacctg
aggaagatggtctgccagaatgcttggggaagagatgtcactgtcaggcttgagatgagc
accaagatgttaagatggggtcgccttgcaagagagctaacaacccttgaggctgcctca
tggagaaagttcactgttggaggacgcgtggagccttcccgttgcaacttcagtgcatgt
gctgttggtaatcgccttgtcctttttggaggggagggagtcaacatgcagcctatggat
gacacgtttgtgcttaacttggaggctgcaaggccagaatggcgccgtgtcaaggtctct
gcctccccacccggccggtgggggcacactctatcatggctgaatgggtcatggctggta
gtatttggaggctgtggacagcaaggtttgctcaacgatgtctttgtccttgatcttgat
gctcagcagcctacatggagggaggttgcgagtgagggtcctccactgccacggtcttgg
cacagctcatgcactttggatggttcaaagctcgttgtttcagatgggtgcactgaatcc
ggagttcttctcagcgacaccttcctctttgacctcacaaaggaaaaaccagcttggagg
gagattcctacatcctggtctccaccatcccgccttggtcacaccatgtctgtctatggt
gcaaccaaactattcatgtatggtggactggcaaagagcggttctctccggctgcgctcc
agtgacgcctacacaatggatgtcggtgaagacagtccccaatggaggcagctggcaaca
actggcttcccaaatgtcagtccaccgccaaggcttgatcatgtctctgtgagcctacca
tgtgggagaatcatcatatttggcggctcgattgctggcctgcactccccagcgcagctg
ttcctgatcgaccctgctgaggagaagccgacatggaggatactgaacgtccctgggcag
ccaccgaagtttgcctggggacacagcacatgtgtagtgggtggcacaagagttctggtc
atgggaggccacaccggggaggagtggatcctgaatgagctccatgagctttgccttgca
agcaggcccgatgaagacgagtga
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