Panicum virgatum (switchgrass): 120647207
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Entry
120647207 CDS
T07260
Name
(RefSeq) DNA topoisomerase 3-alpha-like
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120647207
03460 Fanconi anemia pathway
120647207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120647207
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120647207
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120647207
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Topoisomerases
120647207
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120647207
FA (Fanconi anemia) pathway
120647207
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
120647207
NCBI-ProteinID:
XP_039779822
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Position
9K:66449213..66457929
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AA seq
919 aa
AA seq
DB search
MQPGGGGAIRVLNVAEKPSVAKAVAGILSRGSMQSRAGRSQYNRVFEFNYAIHGQACRML
VTSVTGHLMELEFEDRFRRWHSCDPADLFHAPVRKSVPQDKQAIRQTLEEEARRCQWLVL
WLDCDREGENIAYEVIEVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVD
ARQEIDLRIGASFTRFQTMLLKDAFVIDVTGDGRNLVLSYGPCQFPTLGFIVERFWEIQA
HEPEEFWTINCTHTSDEGTASFGWIRGHLFDYPSAVILYEMCVEEPMATVQNVRNQEKLK
YPPYPLSTLELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIVR
EQVEHPVWGSYAHRLLTPEERLWRNPSNGGHDDKAHPPIHPTKFSRGENNWSQDHNKLYE
LVVRHFLACCSQPAVGAETTVEIDIAGEQFTASGRVVLAKNYLDVYRFDSWGGTLLPTYN
IGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDE
NTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLESCLQQMKA
CFLDARVNKAKLLDAMGIFFARSSRPINETQNPVQAVRPCAACRESEMALKQRQTGEFMV
GCRSYPQCRNVVWLPGSISEASVTNQVCPICTPGPVYKIQFKFRRRDIPPNFDVDHLGCV
GGCDDILKELMEISRFGSRSQAATPARGQTPNGARQGPPRQDLHTNFRPAGQLNNENPSS
MHSQGFRSTHTQNPSNASDAGQVLCTSCGEPCILRIANTDANRGRKFYKCQDPGCGFFKW
EDELENAMPGGRRGRGSSRQAPASASAGRRGGVQARGRRGRGRNADGGMFVSATGDTVSG
CCFTCGDPSHFANACPNRR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccggcggcggcggcgcgatccgcgtgctgaacgtggcggagaagccgtcggtg
gcgaaggccgtggcggggatcctttcgcgcggctcaatgcagtcgcgggcggggcggtct
cagtacaaccgcgtcttcgagttcaactacgccatccacggtcaagcctgccgcatgctc
gtaacctccgtcaccggccacctcatggagctcgaattcgaagaccggttccgccgctgg
cactcctgcgaccccgccgaccttttccacgcccccgtccgcaagtccgtgccccaggac
aagcaggctataagacaaactttggaagaagaagctaggaggtgccagtggctggtgtta
tggcttgattgtgatagagagggtgagaacatagcatatgaagtgatcgaggtttgtaca
ggtgctaacagtcatcttaacatttggagggctcgtttctcagctttgattgacagggaa
atacatgaatctgtgcaacatcttggcagacccaacaaactatttgcagatgctgtggat
gcaagacaggaaattgaccttcgcattggtgcctccttcacaaggtttcaaacaatgctg
ttaaaagatgcatttgtaattgatgtcactggggatggaaggaatttagttctgagctat
ggtccttgtcagtttccaaccctaggcttcattgttgagcgtttctgggagattcaagct
catgaacctgaggagttctggacaataaattgtactcatacttcagatgaaggcactgca
tcttttggttggatacgtggccatttgtttgattacccatctgctgttatactctatgaa
atgtgtgtggaagaaccaatggcaacagttcaaaatgttaggaatcaagaaaagttaaaa
taccctccatatccactaagtactttggagcttcaaaaacgtgcttctaggtacttcaga
atgagttcagagcacacaatgaaggtggctgaagaactttatcaagcaggattcattagt
tatccaaggacagaaactgataacttctctccaaacactgatcttcatgcaattgtacgt
gaacaagtggagcatccagtatggggatcatatgctcaccgacttctaactcctgaagaa
agactttggagaaatcccagcaatggaggtcatgatgacaaggcacatcctcctattcat
ccaaccaaattttcaagaggtgaaaataactggagccaagatcacaataaattatatgag
ctcgttgttcgccatttccttgcatgttgctctcaaccagctgttggagctgaaacaact
gttgaaattgacatagctggtgaacagtttactgcatctgggcgtgttgtacttgctaaa
aattatttggatgtttatcgctttgactcatggggtggtacattacttccaacgtacaac
attggacagcagtttgttccgacaactttaacacttgattctggagtgactcggccacct
cctcttcttgctgaagctgaccttcttagctgcatggataaagcaggaattggcactgat
gcaaccatgcatgatcacataaagaagttgcttgaccgttgttatgcaaccaaagatgaa
aacacacgtttctccccaacaaatcttggtgaggcattggtgatgggttatgatgaaatg
gggtatgagctttggaagccttatttaagatcaatgatggaagctgatatgaaatcagta
agcataggtacaaagagtaaatcagaagtacttgagagttgtttgcagcagatgaaggct
tgctttcttgatgcaagggtgaacaaagcgaagctccttgatgcaatggggatattcttt
gcaaggtctagtaggcctataaatgagacacaaaatccagtacaggctgtgaggccatgt
gctgcgtgccgcgaatctgaaatggcgctgaagcaaaggcagactggtgaatttatggtt
gggtgccgaagttatccgcaatgtagaaacgtggtgtggctcccaggatctatttcagaa
gcgtctgtaactaatcaagtttgtcctatctgcacaccaggccctgtttacaagattcaa
tttaagttccgtcggagggatattccaccaaattttgatgttgatcacctaggttgtgtg
ggtggatgtgatgatatactcaaagagcttatggagataagtaggtttggaagtcgtagc
caggctgcaactccagcaagagggcagactccgaatggtgcaaggcaggggcctccaaga
caggatttacatactaatttccgtccagcaggccaacttaataatgagaacccatcgagt
atgcattcccaaggtttccgttcaacccatacccaaaacccaagtaacgcatcagatgca
ggtcaagtgctgtgcacttcatgtggagaaccttgcatattgcggattgcaaatacagat
gctaacagggggaggaaattctataaatgtcaagatcctggctgtggcttctttaaatgg
gaagacgaactggagaacgctatgccgggaggccggcgcgggcgtggcagcagcaggcag
gcgcctgcgtctgcatctgcaggacggagaggcggcgtccaagcccgaggccggaggggc
agaggccgtaacgctgacggtgggatgttcgtttcagcgacgggcgacaccgtgtccggc
tgctgcttcacctgcggcgatccttcccacttcgccaacgcctgcccgaatcggagatag
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