Panicum virgatum (switchgrass): 120649025
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Entry
120649025 CDS
T07260
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase-like
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00240
Pyrimidine metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
120649025
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
120649025
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Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
Motif
Other DBs
NCBI-GeneID:
120649025
NCBI-ProteinID:
XP_039781631
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Position
9K:complement(434898..439752)
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AA seq
315 aa
AA seq
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MSIAVAPEVAAALARGGAVVALESTIICHGMPYPKNLHTAMEVEAVVRDTGAIPATIAIL
DGVPRVGLNNEQLKRLAISGRQFQKTARRDIAHVVASGGNGATTVSATMFFAHKAGIPIF
VTGGIGGVHRHGEQTMDISSDLTELGKTPVAVISAGVKSILDIPRTLEYLETQGVTVAAY
RTNEFPAFFTEISGCQVPCRVDSPEECAKIIHANKNLDLGSGILIAVPIPTQDAASGNII
ESAIQKALKEAEEKRIIGNAITPFMLERVKELTGGSSLEANIALVKNNARLGAEIAVALS
NLKRKDKNRMGRSAL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgcggtcgcgccggaggtcgcggccgccctcgcgcgcggcggcgcggtcgtc
gccctcgagtccaccatcatctgccacggcatgccctaccccaagaatctccacaccgcc
atggaggtggaggccgtcgtcagggacaccggggctatccctgccaccatagccatccta
gatggagtcccacgtgttggcctcaacaatgaacaattaaagagactggctattagtgga
agacaatttcagaagaccgctagaagggatattgcgcatgtcgttgcatctggtggcaac
ggcgcaacaacagtttctgccactatgttctttgctcacaaggccggcataccaattttt
gtaactgggggaataggaggcgtgcatagacatggcgaacaaactatggacatctcctca
gacttaactgaacttggaaagactcctgtcgctgttatatcagcgggcgtgaagtccatt
ttggacataccaaggacactcgaatacctggaaactcaaggggtcactgttgctgcttac
agaaccaatgaatttcctgctttcttcacagagattagtggatgtcaggtaccatgtcgt
gttgattctccagaagaatgcgccaaaataatacatgcaaacaagaacctagatctaggt
tctgggatccttatcgcggtgccgattcccacgcaggatgcagcttcagggaacattata
gagtctgcaatacagaaagctctaaaggaggcagaggaaaaaaggataataggaaatgcg
atcactcctttcatgcttgaaagagtgaaagaactaactggaggatcttccttggaagcc
aatattgcacttgttaagaacaatgctcgtcttggagcagaaattgctgttgccctttct
aatcttaagcggaaagataaaaacagaatggggagatcggcattgtag
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