Panicum virgatum (switchgrass): 120649808
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Entry
120649808 CDS
T07260
Name
(RefSeq) protein transport protein sec23-1-like
KO
K14006
protein transport protein SEC23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120649808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120649808
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120649808
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
Gelsolin
zf-Sec23_Sec24
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
120649808
NCBI-ProteinID:
XP_039782640
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Position
9K:complement(7589041..7594517)
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AA seq
753 aa
AA seq
DB search
MDFAELEAVEGLRWPWHSWPPTPSAAASLVVPTAVLCSPLQHPTAPDLLPLLPYAPLRCA
TPGCGAALNPFSRVHHGSARWSCPFCGAGANPFPRLLAPDALPAELFPTHSSVEYALPAD
PAEAGGPGPPALVFVVDAATEPAELAVLKGEVRRVVQGLPEGVRVALVTFAASVWVHDLG
FEGCARVVVINGERELESDKIQELLGVHRSRYNKLAMPRSAEAQRFLLPVFECEFNITSA
IEDLSSMSACPRGHRPLRATGAAISTAIALLEGCCSPSTGGRIMVFTSGPATVGPGLVVE
TDLGKAIRSHRDIFNSNAPFTDKARDFYKKVAKRLTDHALVLDLFACSLDQVGAAELRNP
IEVSGGLMVHTESFESEQFKSCFRHMFKRESTDYLNMNFNATIEIVTSKEVKICGALGPC
ISLRRKNSSVSDKEIGEGGTNYWKTSSLSSKTCIAFFFRVDCSHKAEPPTVFFIQFMTRY
RHGDGSYRLRVTTVARRWAAPRSPEIAAGFDQEAAAAVMARLAVYRAETYHVRDVIRWLD
KMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAFFRLML
NREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFDSYFYIVIHYGSKIAQW
RKLGYHKDPNHENLRKLLEAPEVDAEALMVDRFPVPKLIKCDQHGSQARFLLARLNPSVT
QKTQLSEGSEVIFTDDVSLQVFIEHLQELAVQG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgcggagctggaggcggtggagggcctccggtggccgtggcactcgtggccg
ccgactccctcggcggccgcgtcgctcgtcgtccccaccgccgtcctctgctcgccgctg
cagcaccccacggcgcccgacctcctaccgctgctcccctacgcgccgctccgctgcgcg
acccccggatgcggcgccgcgctcaacccgttctcccgcgtgcaccacggctccgctcgc
tggtcctgccccttctgcggcgccggcgccaacccgttcccccgcctcctggcgcccgac
gcgctccccgccgagctcttccccacccactccagcgtcgagtacgcgctgcccgcggac
cccgccgaggcaggcgggccgggcccgcccgcgctcgtgttcgtggtggacgccgccacg
gagccggcggagctcgccgtgctcaagggcgaggtgcgcagggtcgtgcaggggctaccc
gagggggtcagggtggcgctcgtcactttcgctgcgtcggtgtgggtgcatgatctcgga
tttgaggggtgcgctcgggtggttgtcatcaacggcgaacgcgagcttgagtctgacaag
atacaagaacttctgggtgtccaccgttcacgatacaacaagttggctatgccaaggtct
gctgaagcacagagatttttgctgcctgtttttgaatgtgaatttaacatcacatctgca
atagaggatctgagctccatgtctgcgtgcccacgtgggcatcgccctttaagagcaact
ggcgcagctatttccactgctattgctcttctggaaggttgctgctcacccagtaccggt
ggtcgaattatggtcttcacatctggtcctgcaacagttggtccagggcttgtggtggaa
actgatcttgggaaagcaattcgttctcatcgtgacatattcaatagcaatgcacctttc
actgacaaagctcgtgacttttataagaaagttgcaaagaggttaacggaccatgcatta
gttcttgatctatttgcctgctcccttgatcaggttggggctgcggagctgaggaatcca
attgaagtgtcagggggtttaatggtgcatacagagtcatttgagtctgagcagtttaaa
agctgttttaggcatatgttcaagcgcgaaagtactgattaccttaacatgaacttcaat
gctacaattgaaatagtgacatcaaaagaggtgaagatttgtggtgcccttggtccctgc
atttctctccgcaggaaaaacagctcagttagtgacaaggaaattggtgaaggtgggaca
aactattggaaaactagttctctgagcagcaagacctgcattgctttctttttccgagtt
gattgtagtcataaagctgagcccccaactgtcttctttattcagttcatgacaaggtat
cgacatggtgatggtagttatcgcctaagggtaacaactgttgcaagaagatgggcagca
cctcgatctcctgaaattgctgcagggtttgatcaggaagctgctgcggctgttatggcc
aggcttgctgtttacagggcagagacataccacgttagagatgttatacgatggcttgac
aagatgcttatccgttttactgctaaattcggaaactatgttcctgaagatccatccaca
tttcgactctcaacaaacttctccctgtatccgcagttcatgtactacctgcggaggtca
cagttcattgatgttttcaacagctctcctgacgaaactgctttcttcaggttgatgttg
aatagggagggagttgtggggtctctaatcatgatccagccgactctattccagtactca
ttcgatggaccacctattcctgtgctgctagatgtcagctccatctctccagatgtcatt
ttactatttgattcatacttctacatcgtgattcattatggctcaaagattgctcagtgg
aggaagcttggttatcataaggacccaaaccacgaaaatttgcggaagctacttgaagca
ccagaagtagatgcagaggcactaatggtagatcgtttccctgtaccaaaactcataaag
tgtgatcagcatggtagtcaggccaggttcctgctcgctcggttaaatccatctgtgaca
cagaaaacacagctttcagagggatctgaagtcattttcaccgacgatgttagtttgcaa
gtttttattgaacacttgcaggagttggctgttcagggctag
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