Panicum virgatum (switchgrass): 120654506
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Entry
120654506 CDS
T07260
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120654506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120654506
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120654506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120654506
NCBI-ProteinID:
XP_039787990
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Position
1N:complement(2119813..2123532)
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AA seq
446 aa
AA seq
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MEHLRWRTSVNEREFIETALQSDLRVDGRHSFDFRKLRISFGREDGSSEVQLGETHVLGY
VTAQLVQPYRDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVIDRGLRESRAVDM
ESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVIVH
DPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVVDPTYKEEAVMGGRMTATINSNGDICAIQ
KAGGEGVMSSVVMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPATLPQKINVT
DVTMEDKVDDELETQTVKTPSDVQEISKGDEDHRNIKGNPLLTGDRIAKHKQTSTFSGGP
SNWDPYSKGVSLSSLRISQLPDPATTGKARSHEDAQPMLTESSNAEVKITSSSGAVGESE
EAQEIGSPKSLKDAIKPKHKRKKNKK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggagcacctccggtggcgcacctcggtgaacgagcgcgaattcattgagaccgccctc
cagtccgacctccgcgtcgacggccgccactccttcgacttccgcaaactcaggattagc
ttcggcagggaggatggctcgtcggaggtgcagctcggggagacgcacgtgctgggctat
gtgaccgcgcagctagtccagccctacagggacaggccgaatgaggggactctggccata
ttcaccgagttctcgcccatggccgacccagcctttgagcctgggcgtccaggggaatca
gcaattgagcttggccgagtcattgaccgtggcctcagggagagccgggctgtggacatg
gagtccctgtgtgttgttgctgggaagcatgtctggtccgtgcgtgttgaccttcacatc
ttggacaacggagggaatctcattgatgcagctaacattgctgcattggccgctttgtct
actttccggaggccggaatgcacagttggtggggatgatggtcaacaagttatagtgcat
gatcctgaggtcagggatccactccctcttacaattcatcatatgcccattgctgtaacc
tttgcatattttggtgaaggtaacattgtggttgttgatcccacatacaaggaagaagca
gtaatgggagggaggatgactgctacgattaactcaaatggtgatatttgtgccatccag
aaagctggtggggagggtgtcatgtcaagtgttgtcatgcagtgtttaagaattgcttct
gttaaggctgctgatataacaagcaaaataaagaaagcagtagactcatacaccactgag
aaagctttaaagaaagtaaagcgtttaccagccacgttgcctcagaaaattaatgtaact
gatgtaactatggaggacaaagttgatgatgaattggagactcaaactgtgaagacaccc
agtgatgttcaggagataagcaaaggtgatgaggaccatcgaaatataaaagggaatcca
ctcttgactggggacagaattgctaaacacaaacaaacatcaacattcagtggtggtcca
tcaaattgggacccatattctaaaggagtttcattaagctccctcagaatttcacagttg
ccggatccagcaactacaggtaaggccagaagccatgaggatgcacaaccaatgttaact
gaatcatctaatgctgaggtgaaaatcacatcaagctctggggctgttggagagtctgaa
gaggcccaggaaattgggtcgccaaagagcctaaaagatgctattaaaccaaaacacaaa
agaaagaagaacaaaaagtga
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