KEGG   Panicum virgatum (switchgrass): 120654636
Entry
120654636         CDS       T07260                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120654636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120654636
   03036 Chromosome and associated proteins [BR:pvir03036]
    120654636
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120654636
 Complex B
    120654636
 Complex C
   U2 SnRNP specific factors
    120654636
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    120654636
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_MROH2B_C TPR_DNAAF5 HEAT_ECM29 TPR_IPO5 Cnd1 HEAT_2 Htt_N-HEAT_1 HEAT_EF3_N XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N IFRD
Other DBs
NCBI-GeneID: 120654636
NCBI-ProteinID: XP_039788153
LinkDB
Position
1N:3604677..3609640
AA seq 1278 aa
MDGVEAEIARTREERLKMEEALAAGAPMAVSSVTFDTDLYGGGGADPNRFAGYDTSIPAS
EDDAAEEDTEAANPAPRRLAAYTGHAIAAADLPRSADDDGLPKRSQRIIDREDDYRRRRL
NQIISPERHDPFAAGEATPDPSVRTYADVMRDAALQKKKEDLLREIAKKKKEEEEKEKEK
KAAAPEQPAATTKRRNRWDQSQDSDAGAGAKKAKTSSDWDAPDATPGIGRWDATPGRVGD
ATPSVRRNRWDETPTPGRMADADATPAAGGVTPGATPSGAWDATPKLPGGVTPTPGKKQR
SRWDETPASMGSATPGSLGAATPAGYTPGPTPFGAENLATPTPSQIARGPMTPEQYQLMR
WERDIEERNRPLTDEELDAMFPQEGYKILEPPASYQPIRTPARKLLATPTPLGTPLYAIP
EENRGQHFDVPKEVNGLPLMKPEDYQYFGTLLNEEEEEQLSPEEQKERKIMKLLLKVKNG
TPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV
RPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT
TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLKSLV
EIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDTVLKPLWKGIRSHRGKVLAAFL
KAIGFIIPLMDALYASYYTKEVMQVLIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR
NDILPDFFKHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRVVEDLKDESEPYRRM
VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVK
PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV
INAVMEAIEGMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPA
LEDDGDNIFSRPELAMFV
NT seq 3837 nt   +upstreamnt  +downstreamnt
atggacggggtcgaggcggagatcgcgcgcactcgggaggaacggctcaagatggaggag
gcgctggcggcaggcgcgcccatggccgtctcctccgtcaccttcgacaccgacctctac
ggcggcgggggcgccgaccccaaccgcttcgccggctacgacacctccatcccggcgtcc
gaggacgacgccgcggaggaggacacggaggccgccaaccccgcgccgcgccgcctcgcg
gcctacacgggccacgccatcgccgccgccgacctcccgcgctcggccgacgacgacggg
ctgcccaagaggtcccagcgcatcatcgaccgcgaggacgactaccggcgccgccgcctc
aaccagatcatctcgccggagcgccatgacccgttcgctgccggggaggccaccccggac
ccctcggtgcggacctacgccgatgtcatgcgcgatgcggcgctgcagaagaagaaggag
gatctgctgcgggagattgcgaagaagaagaaggaagaggaggagaaggagaaggagaag
aaggctgctgcgcccgagcagcccgctgccaccacgaagaggcgcaacaggtgggatcag
tcgcaggacagcgatgctggtgctggggccaagaaggcaaagacatcctcggactgggac
gcccctgacgcaactcctgggattgggcgttgggacgcaacacctggacgtgttggagat
gccacaccctctgtgagaaggaatagatgggatgagacaccgactccagggaggatggct
gatgctgatgcaacgcctgcagctggcggtgttaccccgggtgcaactccttctggggct
tgggatgctactccaaagctgcctggtggtgtcacaccaactcctggtaagaagcagaga
tcaaggtgggatgagacgccagcgagtatggggagtgccacccctggtagtcttggtgct
gcgacacctgctggttatactcctggaccgacgccgtttggtgcagagaaccttgccaca
ccaactcctagccagattgctcgtggcccgatgactccagagcagtaccagctcatgcgg
tgggagcgggacattgaggagaggaacaggcctctcactgatgaggagcttgacgccatg
ttcccgcaggaggggtacaagattcttgagcctccggcttcctatcagcctataaggacc
ccggcaaggaagcttcttgcaacgccaacacctctgggaacaccactttatgctattcca
gaggagaatcgtgggcagcattttgatgtgcccaaggaggtcaatggtttaccgcttatg
aagccagaggattaccaatactttggaactttgctgaatgaggaagaggaggagcagtta
tcgccggaggagcagaaagagaggaaaatcatgaagctgttgctcaaagtgaagaatggc
acacccccacagcgtaaaacagcacttcggcagctgacagacaaagcccgggaattcggt
gctggaccactgttcaacaagatcctgcccttactcatgcaaccaacactggaggaccag
gagcggcatcttctggtgaaggtcattgatagggtactgtataagctggatgagctggtc
cgtccgtttgtgcacaagattcttgtggttattgagccactgctaattgatgaggactac
tatgctcgtgttgagggccgggagatcatctcaaatcttagcaaagcagctggtcttgcc
actatgattgctgccatgcggccggatattgataacattgatgagtatgtcagaaacacc
actgctagggcgttcagtgtggtggcatctgctttgggtatccccgctctcctaccattc
ttgaaggctgtctgtcagagtaagaagtcttggcaggctcggcacactggtatcaaaatc
gttcagcagatagctattctcatgggctgcgctgttctgccacatctcaagtcactagtt
gagatcattgagcatggtctgagcgatgagaaccagaaagtgcggaccattaccgccctt
tctcttgctgcactagctgaggctgctgcaccctatggcatagaaagctttgatactgtt
ttgaagcctttgtggaagggtatcagatctcaccgtgggaaggtccttgctgccttcttg
aaggccattggtttcatcatccctctgatggacgctctgtatgctagttactacacaaaa
gaggtgatgcaggtccttattagggagttccagtcaccagatgaagagatgaagaagatt
gtcctcaaggtcgtgaagcagtgtgtcagtacagagggtgtggaggctgattatatccgg
aatgacatccttcctgatttcttcaagcacttctgggttaggagaatggctctagatcgt
aggaactataagcagcttgtggagactacagtggagatggcgaataaggttggagttgct
gatattgttgggagggttgttgaggatctgaaagatgaaagcgagccctacagaagaatg
gtgatggaaacaattgagaaggtggtggccaacttgggtgcttcagatattgatgctcgt
ctagaggagctgcttattgatggtattctgtatgctttccaagagcagacaagtgatgac
gcaaatgttatgcttaatggttttggagctgtggttaatgcacttggacagagagttaag
ccttaccttcctcagatttgtggtaccatcaagtggcgattgaacaacaagagcgcaaaa
gttaggcagcaggctgctgatctgatctcccggatagccattgtcatgaagcagtgccag
gaggagcagctcatgggccacttgggtgttgtgctgtatgagtacttgggagaggagtat
cctgaagtgttgggttcaattcttggagccttaaaggctatcgtcaatgtcattggtatg
actaaaatgactcccccaatcaaggatcttcttcctcgtctgacccccatcttgaagaac
aggcatgagaaggtccaagagaactgcattgatcttgttggtaggattgctgatcgtgga
gcagaatttgtgccagcaagggaatggatgaggatttgttttgagctgcttgaaatgttg
aaagctcacaagaagggtattaggagagccactgtgaacacatttggttatattgctaag
gctattggacctcaggatgtgttggcgaccctgttgaataacttgaaggtgcaggagcgt
caaaaccgtgtttgcacaacagtagcgattgctatagttgctgaaacctgctcacctttc
acagttttgcctgcccttatgaacgagtaccgggtcccagagctcaacgtccaaaatggt
gttctaaagtccctctctttcctctttgagtatattggtgagatgggcaaagattacata
tatgctgtcactcccttacttgaagatgccctcatggatagagatctggttcaccggcag
actgctgcctctgctgttaagcacatggctctaggcgttgctggcttgggatgtgaggat
gctcttgtccatctgctaaactatgtgtggcccaacatttttgagacatctccccacgtc
ataaatgctgtcatggaggcgatcgaggggatgagggttgcattaggtgcagctgtgatt
ttgaattattgcttgcaaggtctcttccatccagcaaggaaagtgcgagaagtgtattgg
aagatctataactctctatacattggtgcccaggatgcgcttgttgctgcatatcctgca
ctggaggatgatggggataacatctttagccgtcccgagctggcaatgtttgtctga

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