Panicum virgatum (switchgrass): 120655085
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Entry
120655085 CDS
T07260
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120655085
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120655085
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
120655085
NCBI-ProteinID:
XP_039788747
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Position
1N:complement(10085301..10087455)
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AA seq
445 aa
AA seq
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MEQRLRWRHPGSLVVVAAAFLASAAVSSAGIAVLDEHWQKRKELAEASAREAYRPDPYNV
TNSFNIAVHRATSLRREMGEKKKKKKKSKSGGPCKATNPIDKCWRCRKDWATDRQRMARC
ARGFGHLATGGLGGRIYVVTDPGDADVLNPRPGTLRWGAIQTGPLWIIFARSMIIELTQE
LLVSSDKTIDGRGAQVHIANGGGITVQFARNVIIHNLHVHDVKHTLGGMMRDSPTHTGPR
TKADGDGISLFGATNVWIDHISMSNCEDGLVDVVQSSTGVTISNCHFTNHNDVMLFGASD
SYPQDQVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNAPAIISQG
NRYIAPPNMAAKVITKHYADEGVWKNWVWHTENDLFMNGAIFQPSGGAVPRKVKKDEWVK
PKPGSYVTRLVRFSGTLECRPGKPC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaggctccggtggagacaccccggctccctcgtcgtcgtcgcggcggcgttc
ctggcgtccgccgccgtgtcgagcgccggcatcgccgtcctcgacgagcactggcagaag
cgcaaggagctggcggaggcgtcggcgagggaggcgtacaggcccgacccctacaacgtg
accaacagcttcaacatcgccgtccaccgggcgaccagcctgcggcgcgagatgggggag
aagaagaagaagaagaagaagagcaagtccggcgggccgtgcaaggcgacgaacccgatc
gacaagtgctggcgctgccgcaaggactgggcgacggaccggcagcgcatggcccgctgc
gcccggggcttcgggcacctcgccaccggcggcctcggcggcaggatctacgtcgtgacc
gaccccggcgacgccgacgtgctgaacccgcggcccggcacgctccggtggggcgccatc
cagacgggcccgctgtggatcatcttcgcccggtccatgatcatcgagctcacgcaggag
ctcctggtgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaac
ggcggcggcatcaccgtgcagttcgcgcggaacgtgatcatccacaacctgcacgtgcac
gacgtgaagcacaccctcggcgggatgatgcgggactcgccgacgcacacggggccgcgc
accaaggccgacggcgacggcatctcgctgttcggcgcgaccaacgtgtggatcgaccac
atctccatgtccaactgcgaggacgggctggtggacgtggtgcagagctccacgggggtc
accatctccaactgccacttcaccaaccacaacgacgtgatgctcttcggggccagcgac
tcgtacccgcaggaccaggtgatgcagatcaccgtcgccttcaaccacttcggcaggggg
ctcgtgcagcggatgccgcgctgccgctggggcttcttccacgtcgtcaacaacgactac
acgcactggctcatgtacgccatcggcggcagcaacgcgcccgccatcatcagccagggc
aaccgctacattgcgccgccgaacatggcagccaaagtgatcaccaagcactacgccgac
gagggcgtgtggaagaactgggtgtggcacacggagaacgacctcttcatgaacggcgcc
atcttccagccctccggcggcgcggtcccgaggaaggtgaagaaggacgagtgggtcaag
cccaagccaggctcctacgtcaccaggctcgtccgcttctccggcaccttggagtgccgc
cccggcaagccgtgctga
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