Panicum virgatum (switchgrass): 120656896
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Entry
120656896 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 2
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120656896
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120656896
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120656896
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Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120656896
NCBI-ProteinID:
XP_039791052
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Position
1N:complement(57006611..57009840)
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AA seq
573 aa
AA seq
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MITVAAPEGQPQAAAAAAEVVAPEETVFRSKLPDIEIPSHLPLHEYCFARAAELPDAPCL
IAAATGTTYTYAETRLLCRKAAASLHGLGVGQGDRVMILLQNSVEFVLTFFGASFLGAVT
TAANPFCTPQEIHKQFKASGARLIVTQSAYVDKLRHEAFPRIDAARSDGEGSVLTVVTVD
DAASTPEGCLAFWELVASADEAALPAVSISPDDPVALPFSSGTTGLPKGVVLTHGGQVSG
VAQQVDGANPNLYMREGDVALCVLPLFHIFSLNSVLLCALRAGAAVMLMPRFEMGAMLEG
IQRWRVTVAAVVPPLVLALAKNPALEKYDLSSIRIVLSGAAPLGKELVDALRARVPQAIF
GQGYGMTEAGPVLSMCPAFAKEPSPAKPGSCGTVVRNAELKVVDPDTGLSLGRNLPGEIC
IRGPQIMKGYLNDPEATARTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPP
AELEALLLAHPSIADAAVVPQKDDAAGEVPVAFVVRAANSDIAEDAIKEYISKQVVFYKR
LHRVYFTHSIPKSAAGKILRRELRAKLAAAETA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgatcacggtggcggcaccggaggggcagccgcaagcggcggcggcggcagcggaggtg
gtggcgccggaggagaccgtgttccggtcgaagctgccggacatcgagatccccagccac
ctgcccctgcacgagtactgctttgctcgggcggcggagctcccggacgcgccgtgcctc
atcgcggcggccacggggacgacgtacacgtacgccgagacgcgcctcctgtgccgcaag
gccgccgcgtcgctgcacgggctcggcgtcggccagggcgaccgcgtcatgatcctgctc
cagaactccgtggagttcgtgctcaccttcttcggcgcgtcgttcctgggcgcggtcacc
accgccgccaacccgttctgcacgccccaggagatccacaagcagttcaaggcgtccggc
gcgaggctcatcgtcacccagtccgcctacgtcgacaagctccgccacgaggccttcccg
aggatcgatgcggcgaggagcgacggcgagggcagcgtcctcaccgtcgtcaccgtcgac
gacgcggcgagcaccccggaaggctgcctggcgttctgggagctggtggcgtccgccgac
gaggccgccctccctgcggtgtccatatccccggacgaccccgtggcgctgcccttctcg
tcgggcacgacggggctgcccaagggcgtggtgctgacgcacggcgggcaggtgtccggc
gtggcgcagcaggtggacggcgcgaacccgaacctgtacatgcgggagggcgacgtggcg
ctctgcgtgctgccgctgttccacatcttctcgctcaactcggtgctgctgtgcgcgctg
cgggccggcgcggcggtgatgctgatgcccaggttcgagatgggcgcgatgctggagggc
atccagcggtggcgcgtgacggtggccgccgtcgtgccgccgctggtgctcgcgctggcc
aagaaccccgcgctggagaagtacgacctgagctccatccggatcgtgctctccggcgcc
gcgccgctcggcaaggagctcgtcgacgcgctccgcgcgcgcgtgcctcaggccatcttc
gggcaggggtacgggatgacggaggccgggccggtgctgtccatgtgcccggcgttcgct
aaggagccgtcgcccgccaagccggggtcgtgcggcacggtggtgcgcaacgcggagctc
aaggtggtggacccggacacgggcctctcgctcggccgcaacctccccggcgagatctgc
atccgggggccccagatcatgaaagggtacctgaacgacccggaggccaccgcgaggacg
atcgacgtcgacggctggctccacaccggcgacatcggctacgtcgacgacgacgaggag
gtcttcatcgtcgaccgcgtcaaggagctcatcaagttcaagggcttccaggtgccgccg
gccgagctcgaggctctgctgctcgcccacccttccatcgccgacgcggccgtcgtcccg
caaaaggatgacgccgccggcgaggtcccggtcgccttcgtggtccgcgccgccaactcc
gacatcgcagaggatgccatcaaggagtacatatccaagcaggtggtgttttacaagagg
ctgcacagggtgtacttcacccactccatccccaagtcggcggcggggaagatactgagg
agagagctgcgggccaagctcgccgcagccgagaccgcctga
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