Panicum virgatum (switchgrass): 120658317
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Entry
120658317 CDS
T07260
Name
(RefSeq) cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial isoform X1
KO
K01883
cysteinyl-tRNA synthetase [EC:
6.1.1.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120658317
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120658317
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120658317
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.16 cysteine---tRNA ligase
120658317
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (G)
120658317
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120658317
Prokaryotic type
120658317
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1e
tRNA-synt_1g
CysS_C
tRNA-synt_1f
tRNA-synt_1
DALR_2
DUF6825
Motif
Other DBs
NCBI-GeneID:
120658317
NCBI-ProteinID:
XP_039792503
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Position
2N:complement(56851403..56857506)
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AA seq
570 aa
AA seq
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MAAAARRAAGLLPVLLSSPSAARTPLRRALSLICPHRSYRLLSHPARPFSTSPFSATAPA
SNGAAAERTRELHLYNTKSRKKERFRPRAPNGEVGMYVCGVTPYDDSHIGHARAYVAFDV
LYRYLRYLDYEVRYVRNFTDIDDKIIARANQLGEDPFSLSKRFSDDFLSDMANLQCLPPS
VEPRVSDHIDQIINMIKQILDNNCAYVVGGDVYFSVDNFPEYGELSGRKLDDNRAGERVA
VDERKRNPADFALWKAAKDGEPWWESPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDL
IFPHHENEIAQSRAACCDSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKVIEMYHPLALR
MFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLRDCEESCQQQHKNSGDSLPADTLNYIQ
KLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQEKRLESLAALEEKIRVVL
SVLGLLPSSYHEALQQLREKALRRASITEEYVLQKIEERTAARKAKEYEKSDEIRKELAA
VGIALMDCPDGTTWRPSVPLSEEETVVVKT
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgaggcgtgccgctggccttctccctgtcctcctctcttcgccgtcc
gctgctcgcacacccctccgccgggcgctgtccctgatctgtccgcatcgctcttatcgc
ctcctctcgcaccccgctaggcccttctccacctcccccttctccgccaccgcccccgca
tcgaatggcgcggctgcggagagaacccgcgagctacacctgtacaacacgaagtcgagg
aagaaggagcgttttcggccgcgagctcctaacggggaggtcggcatgtacgtatgcgga
gtcacgccctacgacgacagccacatcggccatgcccgcgcgtacgtcgcctttgacgtc
ctctacaggtacttgcgttatttggactatgaagttcgctatgttcggaacttcactgac
attgatgacaagataattgctagagcaaatcagctgggggaagatccttttagcttaagc
aaaaggttctctgatgatttcctgtcagacatggctaatcttcaatgtttaccaccatct
gtggagccccgtgtttcagatcatattgatcagattataaatatgattaaacagatcctt
gataacaattgtgcatacgtagtgggtggggatgtctatttctctgttgacaattttcct
gaatatggagagttatctggtcgaaaacttgatgataatagggctggtgaaagggttgcg
gttgatgagaggaagagaaacccagctgattttgctctatggaaggctgcaaaagatggg
gagccatggtgggagagcccttggggccctggaaggccaggttggcacatcgaatgcagt
gccatgagtgcacattatttgggtcattcttttgacatacatggtggtggggaagacctc
atctttccgcaccatgagaatgagatagcacaaagccgtgcggcatgttgcgacagtagc
atcaattactggatacacaatggttttgtcaatgtaaatagtcaaaaaatgtctaaatcg
cttggtaacttcgtcaccatacgcaaggttatagagatgtaccacccacttgccttgaga
atgttcttacttggcacacactacaggtctccaatcaactacacaatagaacaactcaat
gttgcgtcagatagattgtattacacgtatcagacgttacgagattgtgaagagagttgc
cagcaacaacacaagaactctggagattccttgcctgctgataccctgaattatatccag
aaacttcatgatgaatttgagacttcaatgtcagatgatctccacacttcagtagcattg
gctgctatttctgaaccactgaaagtcatgaatgatttgttgcacactcgtaagggaaag
aagcaggaaaaacggttggaatcacttgctgccttggaagagaaaataagagtagtgctc
tctgttctaggattgctgccttcaagttatcacgaggctctgcaacaactgcgggagaaa
gcattgagaagagcctccatcactgaggagtatgtgctgcagaagatcgaagagaggact
gcagcaaggaaggctaaggagtacgaaaaatctgacgagatccggaaagaattggcagct
gttggaatcgccctcatggattgtcctgacggaacgacttggagaccatctgtgcctctt
tctgaggaggaaactgtggttgtgaagacatga
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