KEGG   Panicum virgatum (switchgrass): 120661742
Entry
120661742         CDS       T07260                                 
Name
(RefSeq) COMPASS-like H3K4 histone methylase component WDR5B
  KO
K14963  COMPASS component SWD3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120661742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120661742
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    ATAC complex
     120661742
    NSL complex
     120661742
   HMT complexes
    COMPASS/SET1 complex
     120661742
    COMPASS/SET1 complex (yeast)
     120661742
    MLL-HCF complex
     120661742
    MLL3/MLL4 complex
     120661742
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120661742
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_EML NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_ACSF4 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A WD40_like Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_VPS8 PROPPIN Beta-prop_WDR11_1st VPS8_N Beta-prop_LRRK2 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 120661742
NCBI-ProteinID: XP_039796598
LinkDB
Position
2N:62883216..62885976
AA seq 326 aa
MSQQPPPPPPYRPYRQVRAATPHTRAVSCVRFSPCGRLLATASLDGTVALLSPSSLAVIA
VLRGQTDGVSDLCWSTESFYLCTASDDRTLRIWDIRPVLAGGAQADPGADRCVRVLRGHT
NFVFSANFNPQTSSQVASGGFDCTVRIWDVKTGRCTRAIDAHNEPVTSVHFIRDGSIIVS
GSHDGSCKIWDAKTGACLKTVIDDMKPAVSFSMFSPNGKFILVATLDDSLKLCNFATGKF
LKVYSGHVNRVYCIQSAFSITNGKYIVSGSEDNCVYIWDLQGRNILQKLEGHTDTVVSVS
CHPTENKIASGGLDNDRTVRLWVQDS
NT seq 981 nt   +upstreamnt  +downstreamnt
atgtcgcagcagccgccgccgccgccgccgtatcggccgtacaggcaggtgcgggcggcg
acgccccacacacgcgcggtctcctgcgtgcgcttctccccctgcgggcgcctcctcgcg
acggcgtccctcgacgggacggtcgcgctgctctccccgtcctcgctcgccgtaatcgcc
gtcctgcgcggccaaaccgacggcgtctccgacctgtgctggtccacggagtcgttctac
ctctgcaccgcctccgacgaccgcaccctccgcatctgggacatccgccccgtcctcgcc
ggcggcgcccaggccgaccccggcgccgaccgctgcgtccgcgtgctcagggggcacacc
aacttcgtcttcagcgccaacttcaacccgcagaccagctcgcaggtcgcctccgggggg
ttcgactgtacagtgcgcatctgggacgtcaagaccggccgatgtacccgtgccatcgac
gcgcacaacgagcccgtcacctccgtgcacttcattagggacggctcaatcattgtctcg
ggaagccatgacgggagctgcaagatttgggacgccaagactggggcttgcctcaagacg
gtcatcgacgacatgaagcccgccgtgtccttctccatgttctcgcccaatggcaagttc
atcctcgtcgccacgcttgatgactcactgaaactatgcaactttgctaccggcaagttc
ttgaaggtatacagtggacatgtgaacagagtatactgtatccagtctgcgttttccatt
acaaatgggaagtacattgtaagtggatcagaagacaactgtgtgtacatatgggatctg
caagggagaaatatccttcagaaactggaaggccatactgacactgtcgtctccgtgtcc
tgccatccaacagagaacaagattgcttccggtggccttgataatgataggactgtgaga
ctatgggttcaagatagctga

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