KEGG   Panicum virgatum (switchgrass): 120676549
Entry
120676549         CDS       T07260                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120676549
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120676549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120676549
   03041 Spliceosome [BR:pvir03041]
    120676549
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120676549
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120676549
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120676549
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 120676549
NCBI-ProteinID: XP_039813812
LinkDB
Position
5N:complement(13560949..13565681)
AA seq 146 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRGIGRGQDDG
GRGSGGRGRGGVGGKGGNKGGGRGRG
NT seq 441 nt   +upstreamnt  +downstreamnt
atgcttcccctctcgctcctcaagactgcccaggggcatcccatgctcgtggagctgaag
aatggagagacgtacaacgggcatctggtcaactgcgacacgtggatgaacatccacctt
agggaggtcatttgcacctcaaaggatggtgacaggttttggaggatgccggagtgttac
atccgagggaacaccattaagtatcttcgagttccggatgaggttattgacaaagttcag
gaggaaacttccaaaagccgatcagataggaagccaccaggtgttggccgcggaagagga
aggggagacgttggtgctaaacctggcggcagaggcattggacgtggccaagatgatgga
ggcagaggcagtggtggccggggaaggggtggagttggtgggaaaggtggtaacaaaggt
ggaggccgtggccgtggctga

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