Panicum virgatum (switchgrass): 120679231
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Entry
120679231 CDS
T07260
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120679231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120679231
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120679231
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120679231
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120679231
NCBI-ProteinID:
XP_039816707
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All DBs
Position
6N:40727037..40731990
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AA seq
596 aa
AA seq
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MAAPRAAAASAKQVTRRNFAEAVRELRSHLESCDYVAVAAQKTGAPTEWRRALPVDTAET
AYLKAKLAAESFQPLQIAVCPFLLRNSSPSALVAYPYNFHIFPRDEHQLGMPSYSFSCQS
SYLSTMANDGFDFNMCIYDGISYLSRVQESFARQKIFTPHLRPLLPSQSTSVADSVFKSR
IKSRIMHWRKGYAEPNKKDDGSLVSSLSRLILGGETYGSRPSISIDVCSDHQVQLVLEAV
NHISDDLVPLVVPDKAGAARAVCVIFTSSKEDKNLFLMDIIQQSKEEKFRGFREVIDLLS
SSQKPIVSYNCLNDMTMMHSKFVAPLPPNMHEFMCSLKMVFSNVVDVSHLWRQIGPLRKA
KNIQAALSYLQRQYFVPMEIKIEQDGTSGVTKNEQNVLRITKLFAKLSNLLKIGPECQLQ
SGEQYVAVEEYCNVFYPSCMVGDSDDVDFADEPDSAKVVSTENIVFLWGFRGKSVKELKS
YLPGLHQIFSEDFEVKLLDKTCSALIFRNSGTAMQLLKEINSESPSLNDFFSEGLKAAGF
EVYRKVCRLGLWHSDLAEALEGVSSEVAASTLSECNSSQIYWNSSLMLDLEEYLEC
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggctgccccgcgcgccgccgccgcgtcggcgaagcaggtgacgaggcggaacttcgcg
gaggccgtgcgggagctgcgctcccacctggagtcctgcgactacgttgccgtggcggcg
cagaagacgggcgcccccaccgagtggcgccgcgcgctgccggtggacaccgcggagacg
gcgtacctcaaggcgaagctcgccgcggagtccttccagccgctccagatcgccgtctgt
cccttcctgctgcgcaactcctctccctctgccctcgtcgcttacccgtacaattttcac
atatttcctagagatgaacatcagttaggaatgccttcatacagtttctcctgtcaatca
tcttatttatcaactatggctaatgatggctttgatttcaatatgtgcatttatgatggt
atatcttatctatcaagggttcaagaatcctttgcaaggcaaaagatatttactcctcat
cttcgtccactattgccatcacaaagcacatcagttgctgattcagttttcaaaagtaga
ataaagtcaaggataatgcactggagaaaaggatatgcagaaccaaacaaaaaggatgat
ggttcattggttagttcccttagtagattgattttgggtggtgaaacatatggttccagg
cccagtattagtattgatgtctgcagtgatcaccaagttcaactggtcttggaggcagta
aaccatatctctgatgaccttgtacctcttgttgttccggacaaagctggagctgctagg
gctgtgtgtgtgatatttactagttcgaaagaggataagaatcttttcctgatggatatt
atccagcaatcaaaagaggaaaaattccgtggatttcgagaagttattgatctactatca
tcttcacaaaagccaattgtatcgtacaattgcttgaatgatatgacaatgatgcactcc
aaatttgttgcgcctcttccgccaaacatgcatgaatttatgtgttctttaaaaatggtc
ttctccaatgttgttgatgtcagccacttgtggagacaaattggcccattgagaaaagcg
aagaatatacaagctgctctcagttacttacaaagacaatactttgtgccgatggagatt
aaaattgagcaagatggtaccagtggtgtaacaaaaaatgagcaaaatgttctgagaata
acaaaattatttgctaagttaagcaatttactaaaaataggtcctgagtgccaattacaa
tctggtgagcagtatgttgcagttgaagagtattgtaatgtcttttatccaagttgtatg
gttggagattctgatgatgttgactttgctgatgagccagacagcgcaaaagttgtgagc
actgagaacatcgttttcttgtggggcttcaggggaaaatctgtcaaggagttgaaatct
taccttcctggcttacatcagatcttctcagaagattttgaggtcaagttattggataag
acatgctcagctttaatattccgcaattctggtactgcaatgcagttactaaaagaaata
aactcagaaagcccatcattaaatgatttcttctcagaaggtctgaaagctgcgggtttt
gaagtgtacagaaaggtttgcaggttaggactttggcattcagatttagctgaggccctg
gagggtgtttcgtctgaagtagctgcttcaacactttctgagtgcaattcctctcagata
tactggaatagttcgttgatgctagatctggaggagtatttggagtgctaa
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