KEGG   Panicum virgatum (switchgrass): 120680181
Entry
120680181         CDS       T07260                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120680181
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120680181
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120680181
   04131 Membrane trafficking [BR:pvir04131]
    120680181
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120680181
Membrane trafficking [BR:pvir04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    120680181
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    120680181
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    120680181
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_EIPR1 WDR55 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd EIF3I NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_SCAP WD40_2 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 120680181
NCBI-ProteinID: XP_039817730
LinkDB
Position
2K:46910575..46912516
AA seq 305 aa
MPPHKIETGHQDVVHDVAMDYYGKRIATASSDNTIKIVGLSGTSHQQLATLTGHQGPVWQ
VAWAHPKFGSLLASCGYDGRVIIWKEGAKPDEWIQAHTFTEHKSSVNSIAWAPHELGLCL
ACGSSDGNISVFTARADGVWDTTRIDQAHPVGVTSVSWAPAMAPGALITAGASGQFEYVQ
KLASGGCDNTVKVWKLQNGNWRMDCFPALQMHKDWVRDVAWAPNLGLPKSTIASASQDGT
VVIWTEAKEGEQWVGRILHDFKTPVWRLSWSLTGNILAASDGNNNVTLWKEAVDGEWQQV
TTVEP
NT seq 918 nt   +upstreamnt  +downstreamnt
atgcctccccacaagatcgaaactgggcaccaggacgtggtgcacgatgtcgccatggat
tactacggtaagcgcattgcgacagcctcctcggacaacaccataaagatcgtcggcctc
agtggcacctcgcaccagcagctggccaccctgactgggcaccaggggccggtctggcaa
gtcgcgtgggctcaccccaagtttggctcattgctggcctcctgtggctacgacggccgt
gtgatcatatggaaggaaggggccaaacctgatgaatggattcaggcgcatactttcact
gagcacaagtcctctgtcaactccattgcgtgggcacctcatgagcttgggctctgcttg
gcttgcggctcatccgacgggaacatttcagtattcacagctcgtgctgatggagtttgg
gacaccacgcgcattgatcaggcgcatccagttggcgtaacttcagtttcttgggcccca
gcaatggctcctggtgctctgatcactgctggagcttctggccagtttgagtatgttcag
aagcttgcatctggtggctgcgataacacagtcaaagtctggaagctgcaaaatggaaat
tggaggatggattgtttccctgccctgcagatgcacaaggactgggtgagggacgtggcc
tgggctccaaaccttggcttaccgaagtctaccattgccagcgcgtctcaggatggaact
gttgtgatctggaccgaggcgaaggaaggggagcaatgggtaggcaggattttgcatgac
ttcaaaacccctgtgtggaggctgtcgtggtcgcttaccgggaatattttggctgcttct
gatggcaataacaatgtgaccttgtggaaggaagctgttgatggtgaatggcagcaagtg
acgactgttgagccatag

DBGET integrated database retrieval system