Panicum virgatum (switchgrass): 120682893
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Entry
120682893 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120682893
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120682893
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120682893
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
120682893
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54
Syndetin_C
Vps54_N
PXA
DUF7791
Motif
Other DBs
NCBI-GeneID:
120682893
NCBI-ProteinID:
XP_039820849
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Position
7N:18053018..18071995
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AA seq
992 aa
AA seq
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MASRPPLRTTSVASVSSSTDSPTSAGPPGGVPQSITALLNNPLPSAAASSYSWLPWPPPT
IPLPDAAATPPSHPCEVTRADFAPYLAAVSDPYARFADIRLHATAELAASSDAEGAPAAS
SGLAACLREVPALFFKEDFALEDGPTFQAACPLGDDGLQERLGHHLDVVEAHLVREIALR
SESFYEAQGRLRGLDGEIVTAVGRIRELREVVRVLTGDLVGSARQVQELNATRGNLVALQ
QKLTVILYVSQALAALKLLVAAADCAGALDVIDDLQNLLDTDELAGLYCFRHIRDQLGTS
LDSVNSILSAEFVHAAVPDGKAVDAMISSNVKRKASSPLNGTEYEGNIHEEESIILRDRL
LPLIICLLRTYFQDKLPAVLRIYRDTLITVMKASIKATVAELLPVLTARPIDSDSVTGDR
AADADAGGQSLANKLRSLSSEGFVQLLSAIFRIVQVHLQQAAEVKRIVEWIMGNLAGTLS
IDASNPTVQHGGSVSDVSQENDYSVSARVSNTLTRSNSKIPFVQGKANDLSIINSIKNVR
ADVLRENTEAVFAACDAAHGRWAKLLGVRAALHPRLRLQEFLIIYNITEEFIAATEKVGG
RLGYNIRGILQQQSKQFVDYQHSVRMTKIKAVLDQETWVAVDVPEEFQAIVLSLSSTYSS
VNGMDMPSADDNSKFTDPTSQETTYSAENNTDNGKLTSAAGESKIESTSQTENNVTGNQR
STLQTIVHGGVGYHMVNCGLILLKMLSEYVDISKCLPSLSFEVVQRVVEILKLFNTRTCQ
LVLGAGAMQVSGLKSITSKHLALASQIITFIHSLIPDIRRVLFLKIPEARKHLLMSELDR
VTQDYKVHRDEIHSKLVQIMRERLLANLRKLPQIVEGWNGPEDNDLQPSQFAKAVTKEVT
YLHRILSQTLLEVDVQTIFRQVVQIFHSHITEAFRKLEVSTPQAKNRLCRDVQHILTCIR
KLPAENFSSETIPNYGLLDEFLAENFGTKVGE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgcccgcccctccgcaccacctccgtcgcctccgtctcctcctccaccgac
tcccccacctccgccgggcctcccggcggcgtcccgcagtccatcaccgcgctcctcaac
aacccgctcccctccgccgccgcctcctcctactcctggctgccctggccgccccccacc
atccctctccccgacgctgctgccacgccgccgtcgcacccctgcgaggtcacccgcgcc
gacttcgcgccctaccttgccgccgtctccgacccatacgctcgcttcgccgacatccgc
ctccacgccaccgccgagctcgccgcctcctcggacgccgagggcgccccggctgcctcc
tccggcctcgccgcctgcctccgcgaggtgcccgcgctcttcttcaaggaggacttcgcg
ctcgaggacgggcccaccttccaggccgcctgcccgcttggcgacgacgggctacaggag
cgccttggccaccacctcgatgtcgtggaggcgcacctcgtgcgggagatcgcgctccgg
tccgagtccttctacgaggcgcagggccggctccgtgggctcgatggagagattgttacg
gcagtagggaggatccgcgagctcagggaggtggtccgagtgctcacgggggaccttgtc
gggtcagcaaggcaggtgcaggagctcaatgccacgcggggtaaccttgtggcactgcag
cagaagcttactgtcatcctctacgtcagccaggcccttgccgcactcaagttgcttgtt
gcagcagcagattgtgctggtgcccttgatgtcatcgatgacttgcaaaatttactagat
actgatgaacttgctgggctttattgctttcgccatattcgagatcagctggggacatca
ttagattcagtgaacagcattctttcagcagagtttgtgcacgctgctgttcctgatgga
aaagctgtagatgctatgatttcatcaaatgtgaaaagaaaagcttccagcccattgaat
gggacagaatatgagggtaacatacatgaggaggaaagcattattctcagagatcgactc
ctccctcttattatttgcctgctgagaacgtattttcaggacaaacttcctgcagttctc
agaatctaccgggatacacttattactgttatgaaagcttcaatcaaagccacagtcgca
gagttgcttccagttttaactgccagaccaatagattctgattcagtaactggagacagg
gccgctgatgctgacgctggaggccagtccttagcaaataaattgcgaagtttgtcatct
gaagggtttgttcaacttttatctgctattttcaggatagtacaggtacatttacagcaa
gcagccgaagtgaaaagaatagttgagtggatcatgggaaaccttgctggaaccttaagt
attgatgccagcaatcctacagtacaacatggtggttcagtttctgatgtttcccaagag
aatgactacagtgtttctgcacgggtatctaatactcttacgcggagtaattccaaaatc
ccctttgtccagggaaaagcaaatgatttgtccattataaattcaataaagaatgtccgg
gctgatgtattgagagaaaacactgaagcagttttcgctgcatgtgatgctgctcatggg
cgatgggctaaactcctaggtgtccgtgctgctctacatcccaggttaaggcttcaggaa
ttcttgatcatctacaatataacagaagaatttatagctgctactgaaaaggttggaggc
aggttgggttacaacattcgtggaattctacagcaacagtcgaagcagtttgttgattat
cagcatagcgttcggatgacaaaaatcaaggctgttcttgaccaagagacatgggttgct
gttgatgttcctgaagagttccaagcaattgttctatcgctttcatccacgtattcttct
gttaatggcatggatatgcctagcgcagatgacaactcaaagttcactgatccaacaagt
caagaaacgacatattcagctgaaaataatactgataatggcaagttaacatctgcggca
ggtgaaagcaagattgagtccacttctcagactgaaaataatgtcactgggaatcagagg
tcaaccttgcaaactattgtacatggaggtgttggctatcatatggtaaactgtggtttg
atattgttgaagatgttatcagaatatgttgacatcagtaaatgtttgccatcgttatct
tttgaggtggtccaacgtgttgtggaaatattaaagcttttcaacacaaggacttgccaa
cttgttctcggtgcaggtgccatgcaggtgtctggtcttaaatcaattacgtctaagcat
ttagctttggcgagtcaaataatcacttttatacattccttaattccagatatccggcgc
gtacttttcctgaaaatacctgaagcacgcaaacatcttttgatgtctgaattggataga
gtcactcaggactacaaggttcatcgagatgaaattcacagcaagctagtccagataatg
agagagagattgcttgcaaatcttagaaaattaccccaaattgttgaaggctggaatggc
ccagaggataatgatttgcagcctagtcaatttgcaaaagctgttacaaaggaagtaacc
tatttgcatcgtatcctttctcaaacattgcttgaggtcgatgtgcaaacaatattcagg
caagttgttcaaattttccattcacacattacagaagcatttagaaaattggaagtcagt
actcctcaagcgaagaacagattatgccgagatgttcagcatattcttacatgtatccgg
aagttgccagctgagaacttcagttcagaaaccattccaaattatggtcttcttgatgaa
ttcttggctgagaactttgggacaaaagttggtgagtga
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