Panicum virgatum (switchgrass): 120688205
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Entry
120688205 CDS
T07260
Name
(RefSeq) chaperone protein ClpB2, chloroplastic-like
KO
K03695
ATP-dependent Clp protease ATP-binding subunit ClpB
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120688205
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP100
120688205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
Clp_N
ClpB_D2-small
AAA
AAA_5
AAA_16
AAA_22
Sigma54_activat
nSTAND3
IstB_IS21
AAA_14
AAA_18
Zeta_toxin
TniB
Mg_chelatase
AAA_7
AAA_25
AAA_28
AAA_24
NACHT
ABC_tran
NBD_SMAX1
Torsin
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
120688205
NCBI-ProteinID:
XP_039826331
LinkDB
All DBs
Position
9N:complement(58531689..58537647)
Genome browser
AA seq
975 aa
AA seq
DB search
MAAAPPMSADVLSFLPSAPAAAAAPTPVVAAAWGAARAGSVRSKAALRMARGGAGLAPVV
GRRPHRRPLSVRCDATSRDGRITQQEFTEMAWQSIVSSPEVAKESKHQIVETEHLMKSLL
EQRNGLARRIFSKAGVDNTRLLDATEKFIQRQPKVLGEDPGSMLGRDLEGLIQRARDFKK
EYGDSYVSVEHLVLGFAEDKRFGKQLFKDFQITAKTLKSAIESIRGKQNVIDQDPEGKYE
ALEKYGKDLTAMARQGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAIAEGL
AQRIVQGDVPQALTNRRLIALDMGALIAGAKYRGEFEDRLKAVLKEVTDSDGQTILFIDE
IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVD
QPSVEDTISILRGLRERYELHHGVRISDSALVAASVLSDRYISGRFLPDKAIDLVDESAA
KLKMEITSKPTALDEIDRAVLKLEMERLSLTNDTDKASKDRLSRLEAELSLLKDKQRKLT
EQWEHEKSVMTKIQSIKEEIDRVNVEIQQAEREYDLNRAAELKYGSLNALQRQLQTTENE
LDEYQSSGKSLLREEVTQDDIAEIVSRWTGIPVSKLKQSDREKLLYLEEELHKRVVGQDP
AVKAVAEAIQRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAAFMFNTEEAVVRIDMS
EYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEIEKAHSDVFNVFLQILD
DGRVTDSQGRKVSFTNTIIIMTSNVGSQYILNMDDEGGSSDSGYENIKKRVMDAARSVFR
PEFMNRVDEYIVFKPLEREQINSIVKLQLARVQKRIADRKIKLEVSPGAIEFLGSLGYDP
NYGARPVKRVIQQYVENELAKGILRGDFKDEDSILVDTQVTVPSNGQLPQQKLVFRKVGE
ESKSTAEGEKFLPAV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgccaccgatgtcagccgacgtcctcagcttcctcccgtccgcgcccgcc
gccgccgccgcgccgacgccggtcgtcgccgcggcgtggggcgcggcgagggcggggtcg
gtgaggagcaaggcggcgctcaggatggcgagaggaggagctggcctggctccggtggtt
gggaggaggccccaccggcggcctctctccgtgcggtgcgacgccaccagccgggacggc
aggattacacaacaagagttcaccgagatggcatggcaatcaattgtctcatcacctgag
gtggccaaggaaagtaaacatcagattgtggagactgaacatctgatgaagtccttgctg
gagcaaaggaatgggcttgcccggaggatcttttccaaggcgggagtcgacaacacaagg
cttcttgatgctacagagaagttcatccagagacagcctaaggtattaggtgaagatcct
ggttccatgttggggcgggacttggaaggtctgatacaaagagcaagggacttcaagaaa
gagtatggtgattcatatgtctcagttgaacatctagtccttggctttgccgaagataag
cggtttgggaaacaactattcaaggattttcagattactgcgaagaccttgaaatcagcc
attgaatcaatcagagggaagcaaaatgtaattgatcaagatcctgagggcaagtacgaa
gctttggagaagtatggaaaggacctgacagctatggcacgccaagggaagcttgatcca
gttattggaagggatgatgaaattcgaagatgcatacagattttatcgcggagaactaag
aacaacccggttttgattggtgaacctggtgttggaaaaacagctatagctgaagggctt
gctcagaggattgtacaaggagatgtccctcaagctctgacaaaccgtcgactcattgca
cttgatatgggtgctttgattgctggtgcaaaatatcgtggagaatttgaggataggcta
aaggctgttctcaaagaagttacagactctgatggacagaccattctttttattgatgag
attcacacagttgttggagcaggtgccacaaatggtgcaatggatgctggtaatcttctc
aaaccaatgcttgggagaggagagctacgttgtattggtgcaacaacacttgatgaatac
cgcaaatatattgagaaagatccagcactagagcgtcgcttccaacaagtttatgttgac
cagccttcagttgaagatacaatctcaatactacggggactacgagagagatatgaactg
caccatggtgtacgcatatctgacagtgcccttgtggctgcctctgttctttcggaccgt
tatatcagtggacgattcttgcctgacaaagcaattgatctggttgatgaatcagctgcc
aagttgaaaatggaaataacatcaaaacctactgctctggatgagatcgatcgtgctgtc
ctgaagcttgagatggagcgtctctcacttacaaatgatacagacaaagcttcaaaggac
agactatcccgccttgaagcagaactatcactcttgaaggataaacaacgtaaattgact
gagcagtgggagcatgagaagtcagtgatgactaaaattcaatctatcaaagaagagatt
gacagggtaaatgtggagatacagcaggcggaacgtgagtatgatctcaatcgtgctgct
gaactgaagtatggcagtctgaatgccttgcagcgccagcttcaaacaacagagaatgaa
ctagatgaatatcagagttcaggaaaatccttgctaagagaagaggtgactcaagatgat
atagcagaaatagtgagcaggtggacaggtattccagtctctaaactaaagcaatccgac
agagagaagttgctgtatctggaggaagagctgcacaagcgtgtagttggtcaggaccct
gccgtaaaagcagttgcagaagctattcagagatccagagctggtctgtctgacccgaac
cgtcctattgccagtttcatgttcatgggacctacaggagttggcaaaacggagctagca
aaagcccttgctgcttttatgtttaacactgaggaagctgttgtaaggattgacatgagt
gagtacatggagaagcattcagtctcaagattgattggagctcccccgggttatgttggg
tatgaagagggtggtcagctaacagaggctgttcgccggaggccatattctgttgtcttg
tttgatgagattgagaaggctcattcagatgtcttcaatgttttccttcaaatattggat
gatggtagggttactgactcccaaggccggaaagtgagcttcaccaacactatcattatc
atgacgtccaacgttgggtcgcagtacatactaaacatggacgacgaaggcggatcatct
gattcaggctatgagaacataaagaagagggttatggatgctgcaagatcagtattccgc
cccgagttcatgaatcgtgtagatgagtacattgttttcaagcctctggagagagaacag
atcaacagcatcgtcaaattacagctggcaagagtacaaaagaggattgccgaccgaaag
atcaaacttgaagtctcacctggagcaattgaattcctaggaagccttgggtatgacccg
aactatggcgcaaggccagtgaagcgggtgattcaacagtatgtggagaacgaactcgca
aagggcatcctcagaggtgatttcaaggacgaggacagcatcttggtagacacccaggtc
acagtgccatcgaatggccagcttccacagcagaagcttgttttccggaaggtgggtgag
gaatcaaaatccactgccgaaggcgagaagttcttgccagccgtctga
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