Panicum virgatum (switchgrass): 120690256
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Entry
120690256 CDS
T07260
Name
(RefSeq) peroxisome biogenesis protein 12-like isoform X1
KO
K13345
peroxin-12
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120690256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120690256
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Peripheral membrane proteins
120690256
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pex2_Pex12
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4
NinF
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
120690256
NCBI-ProteinID:
XP_039828785
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Position
9N:complement(24586372..24592191)
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AA seq
410 aa
AA seq
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MLFQVGGQGARPTFFEMSAAQQLPASLRAALTYSLGVFALRRPILHKVLDYEDEFFALLM
GVLESHSLRTTANPTWMQLLGQEISCSNGSFSESLYGLRRRPVKVSVKRKSPGTESSDKV
YDSALRKRQKILSVVFLVVLPYFKSKLQSIYNKEREARLQATLWGQDDVRFDEDGFVLNQ
EQTSQAQNDPTTGEVSNLTRFKKNFASLIGVCYPWIHATNEGLSFAYQLLYLLDATAFYS
PALHVLGLHVCRATGQELMDSSSRISRIRNRELKRLRGPPWLKAVQRVFLSCIYTTLDYA
QTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPTPKVAKDGIPLPTDKTLCPLCC
QKRANPSVLSVSGFVFCYSCIFKSVSQHKRCPVTLMPATVEQISRLFNDL
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgctgttccaggtgggagggcagggcgcgcggcccaccttcttcgagatgtcggccgcg
cagcagcttcccgccagcctccgcgccgcgctcacctactcgctcggggtttttgcacta
agaaggccaatactacacaaagttttagattatgaagatgaattctttgctttgttaatg
ggtgtccttgagtctcatagtctacggacaacagcaaaccccacttggatgcagctattg
ggacaagaaatttcatgcagcaatggttctttttcagagtcattatatggtctcaggagg
agacctgttaaggtttcagtgaagagaaagagccctggtacagaatccagtgacaaagtc
tatgattctgcactaaggaagcgtcagaaaatcctctcggtggttttcttggttgttttg
ccatattttaagtcaaagttgcagtctatatacaataaagaaagggaagccaggttgcag
gcaactctttggggtcaggatgatgtgaggtttgatgaagatggcttcgtattaaatcag
gagcagacttcccaagcacagaatgaccctacaaccggagaagtgtcaaacttgacacgt
tttaagaagaactttgcttcactcataggtgtttgctatccatggattcatgcaactaat
gaaggtctctcgtttgcataccagctgctatatttgttggatgccactgctttttatagt
ccagcactgcatgtgctagggcttcacgtttgtcgtgctactggacaagagctgatggat
tcatcttctaggatatcaaggattagaaatcgtgaacttaagagacttcgtggtcctcca
tggttgaaggctgtgcaacgggtgttccttagttgtatatatacaactctagattatgca
caaacaggtttaattgctgcagtcttctttttcaagatgatggagtggtggtaccaatcc
gctgaagaaagaatgtcagctccgactgtatacccaccgccgcctccaccaccaactcca
aaggttgccaaagacggaatccccttgccaactgacaaaacgctctgccccctgtgctgc
cagaagcgcgccaacccctctgttctttctgtttctggttttgtattttgctacagctgc
atattcaagtccgtctctcagcataaaaggtgccctgtcacgctgatgcctgccactgtt
gaacaaattagtcgcctcttcaatgatttgtag
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