Panicum virgatum (switchgrass): 120690780
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Entry
120690780 CDS
T07260
Name
(RefSeq) DNA topoisomerase 6 subunit A3-like
KO
K10878
meiotic recombination protein SPO11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120690780
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
120690780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TOP6A-Spo11_Toprim
TP6A_N
AhpC-TSA_2
AhpC-TSA
Topo_VI_alpha
Redoxin
Motif
Other DBs
NCBI-GeneID:
120690780
NCBI-ProteinID:
XP_039829520
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Position
9N:complement(68828440..68834057)
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AA seq
655 aa
AA seq
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MAARAPLAMPHAAAAADPRPAGAPVAPRPTAPCLRARGTSGVPLLHQRPVQRAHRLLLPA
ARPGAIGSAAEAAPAEGLAQKLQGVEVFDLSGKAVTIVDLWKDRKAVIAFARHFGCVLCR
KKADLLAEKQDVMQTAGVALILIGPGSVEQANAFCEQTKFKGEVYADPTHSSYDALEFAF
GLFSTFTPAAGLKIIQLYREGYRQDWELSFEKNTRTKGGWYQGGLLVAGPGIDNILYIHK
PRAAASYAESLRSKLRPDASILATLRSLASASASSSKSKAAGKSLADHDPSAEPTSSYIV
VADQDSSSVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESAR
PFANVATARKATVTARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQSQSDAVLDDVSCM
LGCTRSSLHVVASEKGVVVGRLVFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFI
LLVEKDAAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPY
GLKILSVYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKE
LLEEDFVKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcgcgcgccgctcgccatgcctcacgccgccgccgccgccgacccgcggccg
gctggggcacccgtggccccgcgcccaaccgcgccgtgcctccgcgcgaggggcacgagc
ggcgtccccctcctccaccagcggccagtgcagcgagctcaccgcctcctcctccctgcc
gccaggccgggagccatcgggagcgccgcggaggccgcgccggcggaggggctggcccag
aagctgcagggggtggaggtgttcgacctgagcggcaaggcggtgaccatcgttgatctg
tggaaggacaggaaagccgtgatcgcgtttgcccgccattttgggtgtgtgctgtgccgg
aagaaggccgatcttctcgcagagaaacaggatgtcatgcaaactgctggagttgctctt
attttaattggaccaggtagtgttgaacaggcaaacgcattttgtgagcaaacaaaattc
aaaggagaagtatatgcagacccaacccactcatcatatgatgctcttgaatttgcattt
gggctgttctcaaccttcacaccagcggctggcctcaagataatacagttgtacagagaa
ggatacaggcaggattgggaattgtcattcgaaaagaacaccaggacaaaaggtggatgg
tatcaagggggactacttgttgcaggtcctggtatcgacaacatcctgtacatccacaag
ccgcgcgccgccgcgtcctacgccgagtccctccgctcgaagctccgccccgacgcctcc
atcctcgccaccctccgctccctcgcctccgcctccgcctcctcttccaaatcaaaggcc
gccgggaagtccctcgcggaccacgacccctcggcggaacccacctcctcgtacatcgtg
gtggccgaccaggactcctcctccgtcacctcccgcatcaaccgcctcgtcctcgccgcc
gcgcgcagcatcctctccggccggggcttctccttcgcggtgccctcccgcgccgcctcc
aaccaggtctacctcccagacctcgaccgcatcgtgctcgtccgccgcgagtccgcgcgc
cccttcgccaacgtcgccaccgcgcgcaaggccaccgtcacggcgcgcgtcctctccctc
gtccacgccgtcctccgcaggggcatccacgtcaccaagcgtgacctcttctacaccgac
gtcaagctcttcggcgaccagtcccagtccgacgccgtcctcgacgacgtctcctgcatg
ctcggatgcacccggtcctccctccatgttgtcgcctccgagaagggtgtcgtcgtcggc
cgcctcgtcttcgccgacgacggggaccggatcgactgcacgcgcatgggcgtcggcggg
aaggccatcccgcccaacatcgacagggtctcgggcatcgagagcgacgcgctcttcatc
ctgctggtggagaaggacgccgcattcatgcgccttgccgaggacaggttctacaaccgc
ttcccgtgcatcattctgacggcgaaggggcagccggatgttgccacccggctgtttctg
cggcggctcaaggtggagctcaagctgccggtgctcgctctggtggactccgatccatac
gggctcaagatcttgtcggtgtacatgtgtggttcgaaaaacatgtcatatgacagtgct
aatctgacgacgccggacatcaagtggctcggagtccggccgagcgacttggacaagtac
agggtgccggagcagtgtcgtctccccatgacagatcacgatatcaaggtggggaaggag
ctgcttgaggaggactttgtgaagcagaatgagggctgggtgaaggagctggagacgatg
ctgcgcaccaggcaaaaggctgagatacaggccctcagctccttcgggttccagtacctc
accgaggtctatctgcctctcaagctgcagcagcaggactggatttga
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