Panicum virgatum (switchgrass): 120692310
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Entry
120692310 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP93A-like
KO
K14309
nuclear pore complex protein Nup93
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120692310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692310
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120692310
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nic96
KwaB
TPR_12
TPR_2
Motif
Other DBs
NCBI-GeneID:
120692310
NCBI-ProteinID:
XP_039831512
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Position
9N:63890202..63897718
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AA seq
871 aa
AA seq
DB search
MAGVGSSGGGGGGDTEMGGWTGLLHSSTKILEQAAPTPHFPPLQRNLDQLKALSTKLKAK
TVRAEAPSQSLSATRLLAREGINAEQLARDLKSFELKTTFEDVFPSEATSVEEYLQQLHE
VAIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSLSLFSTLSKRNINISTSGLA
RPALMPPSTSSPQASSGLPSAGIMPIPNKTIIENKSSVYAGVVRDLNDARGRSLPFNPAT
AFRAAYESLSVDAVGTKSVTMQKMWHLIQALVGEGLTHRNVSRKMSLVIGARRHLEWGHE
KYIIETINSHPALAALGGSVGNLQKIRAFMRVRLRDQGVLDFDATDLRRQPPVDTTWQQI
YFCLRTGYYDEARQVALSSRAAHNFAPLLADWISTNGAVSQETALAASEECDKMLRMGDR
PGRPGFDRKKLLLYAIICGCRRQIERLLKDLPTIFNTIEDFLWFKLSALREHNNASSNVL
NEGLVPYTLDDLQSYLNKFEPSYYTKSGKDPLIYPYVLFLSIQLLPAILYLSKEVGEEGY
HVDAVHISIALADHGVLPDGVGSGQKIGVMDACAEAASIIRQYGSMYLRNGNIDLALQYY
AQAAAAMGGGEVSWIGQGNADQQRQRSLMLKQLLTEILLREGGIQLLLGPSGMGEEGGLK
KYMMDWRSRQQFLLEASHRCQEAGLYDKAVEIHKRVGSFAMALQIINKCLSDAVCAMAHN
RLDGESQATALIHSGNEILETARYSSEASIQDKDLISEQQTVLRQLEAILHIYRLARAEQ
TVDALMETIRLPFLHLDPQSPNVIVDIFRNLSPYVQACVPDLLKVALNCIDNVRDTDGTL
RAVKSKIANQVANNMSRNWPQDLYQKVAQCI
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcggcagtagcggcggcggaggcgggggtgacacggagatgggagggtgg
acagggctcctccactcctccaccaagatcctcgagcaggccgcgcccaccccgcacttc
cctcctcttcagaggaacctggaccagctcaaggcgctctccaccaagctcaaggccaaa
accgtccgcgccgaggcgccgtctcagtcgctttccgccaccaggttgctggctcgcgag
ggtatcaatgcggagcagcttgccagggacctcaagtcattcgaactcaagacaaccttt
gaggatgttttcccatctgaagcaacctctgttgaggaatacctgcagcagcttcatgaa
gttgctatagtttcgtccatccaagaagctcaaaaggacaatttaaggagtttcaacaac
tacatgatgcaagttcttgaggatgactggcagaaagagaagagagacttcttgcagagt
ctaagcctgttttctacattatccaagagaaacattaatatctcaaccagtggattggct
cgccctgctttgatgccaccatcaacttcgagtcctcaggcttcatcaggcctgccctct
gcagggatcatgcctatacctaacaaaactattattgaaaataaatcttcagtttatgct
ggggttgtgagggacctcaatgatgctagaggacgcagtctaccttttaatcctgctaca
gctttcagggctgcttatgagtcattatctgttgatgctgttggcacaaaatcagtgacg
atgcaaaaaatgtggcatctaattcaggcattagttggggaagggttgactcatcgaaat
gtttcaagaaaaatgtcactagtgataggtgcaagacgccatctcgagtggggtcatgaa
aagtacataattgagaccatcaacagccatccagctctcgctgctcttggtggatctgtt
ggcaatcttcagaagattcgggcgttcatgcgggtacggctgcgggatcaaggtgtgcta
gattttgacgcaactgacctacgcagacagcctccagtggatacaacctggcaacagatt
tatttctgcttgagaaccggatattatgatgaagcaagacaagttgccttatcatctcgt
gctgcccacaactttgccccactgcttgcagactggatttctactaatggtgctgtatcg
caagagactgctctggctgcttctgaggaatgtgataaaatgctaagaatgggtgatcga
ccaggacgtcctggttttgatagaaagaagttgctactgtatgccataatttgtggttgt
cgacggcaaattgaaaggctgctaaaagatctgccaacaatttttaacactatagaggat
ttcttgtggtttaagttgtcagctctgcgggaacacaacaatgcatcttctaatgttttg
aatgaaggcttggtgccttatacactggatgatctgcaaagttacttgaacaaatttgag
ccatcatattatacgaagagtggaaaagatcccttaatctacccctatgttctgttctta
agcatccaattacttccagcaattctttatctgtccaaagaagttggagaggagggatac
catgttgatgctgtgcatatttcaattgctttagctgatcatggtgttctccctgatggt
gttggatcaggccagaagataggtgttatggatgcttgtgcagaggctgccagcataata
cggcagtatggctcaatgtacttgcgtaatggcaatattgatttagccttacagtattat
gcgcaagctgctgctgcgatgggtggaggagaggtatcatggattggtcaagggaatgct
gatcagcagcgacaacgaagtttgatgttgaagcaactcctgacggagatattgctaagg
gaaggtggtatacaacttctgctaggtccaagtggaatgggggaagaagggggactaaaa
aaatatatgatggattggagaagcaggcagcaatttttacttgaagcatcccatcgatgt
caagaggcagggctctatgacaaagcagtggaaattcataaaagggtaggatcttttgcc
atggcacttcagataataaacaagtgcctgtctgatgctgtgtgtgccatggcacacaat
aggttagatggtgagagtcaggctacagccctaatccattctggcaatgagattttggag
acagccagatattcttctgaagccagcattcaagacaaggatctcatttctgagcaacaa
actgtactgagacagcttgaagccattctccatatttataggctagctcgagctgaacag
actgtagatgctttgatggaaaccatcaggctccccttccttcatttggatcctcagtct
ccaaatgtgattgttgatattttcaggaatttatcaccctatgttcaagcttgcgtacca
gatctcctgaaggttgctctgaattgcattgacaatgttagggacactgatgggaccttg
cgtgctgtcaagtccaagattgcaaaccaagtagcaaacaacatgagccggaattggccg
caggatttgtatcagaaggtggcgcagtgcatataa
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