Panicum virgatum (switchgrass): 120694929
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Entry
120694929 CDS
T07260
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120694929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120694929
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120694929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
120694929
NCBI-ProteinID:
XP_039834188
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Position
2K:68383286..68389040
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AA seq
1243 aa
AA seq
DB search
MIKGSIGNHNHPIGVVPFEAFHNGSWHGVNSIRIQNGGLFVKFVCCGSSVEHNIDGDYLR
LHSRKATCLDCSHVLRPGADVCVKQASSRGETKSSVPLYRDARLIKIMKKHHTDQCLCLF
AVIFYKDQCPGSKGKVIPGTIAEVVTIGDVFILQKLQSGEFQDRSVHWSSAKDCLHHNRS
KLLSARFSTEVTHLIVLSILRGMEFNIKVVEGKIIYQITKRDQVRCSADSMSIPPGFSKN
MDIISYMPRDEALRPRIRMVPVIQVNKHNLTEYGCTTEMDELDSGQDVEVLYECVDLRRS
KRMKTQPDRFTSYDAPNFNRTYKKKEDNTSSTMNENSESDLSWDSPVQEESGNEEVLGNS
GVKQTAFSPFTIKQDPRSMEGQRKNPMKRSQCSFPVKEKSTSVEIEKNATEQRCSDSHIP
HTPAKNKEKYSRPPLSFRLKPFTSSHSLGGNSEPAFCQKRGRKRKRHMREREYNEMIEQC
IGNIQCEIERDSDFKLDVQIMNCSGNAYRKEDFTWPSSTDNQEEKDEFEELWKEMDYALA
SLELLEKKQCYTITNLDFQMPDSEATDDSDTDLGKRGEHCHHDCILDEQLGLTCRLCPVV
CTEAKDIFPPMFTGKDHERPGRSEFCQHDHVLDPSFLEICAPEFSKFKGSGNVWASITDL
EPKLHAHQRKAFEFIWKNLAGSLHLEEMDDPTESRGGCVVAHTPGAGKTLLLISFLVSYL
KVHPRSRPLVLTPKAAIHTWRREFEKWGISLPLHVLHYSNKRGKAMGTLSSKMQAFLKNF
RQPSWKMMRMMDSLDKLCKWHEDPSILLMTYHSFLALTKENSKVQHRAFMAKVLMNNPGL
LILDEGHNPRSNKSKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLTLARPRFVNDVMM
ELVPEAEREAQKRTSKHQEALARRIFVEKVGQKIESSSIDDRVDGISVLNKLTRGFIDSF
EGTEQNNLPGIRVYTLFMKPTDIQEEVLAKVTMPIPGNARYPLEVELLITIASIHPWLIK
TTKCASTYFTLEEVARVDKYKRSFAVGCKSKFVIDLVHKSSFRGERVLIFCHNVSPINFL
VKLIEIVFGWRLGEEVLVLQGDQELPVRSDVMDKFNSDRKGKRKVLLASTTACAEGISLI
GASRLVMLDSEWNHSKTMQAIARAFRPGQERMVYVYLLVASGTWEEDKYKSNRRKAWIAK
MVFFGRYVEYPLQNHVTEIDDEVLKELADEDETKAFHMIVKQD
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggatccataggcaaccataaccaccccatcggtgtagttccattcgaggcc
tttcataatggatcatggcatggagttaattctataaggatacagaatggcggtctcttt
gtgaaatttgtctgctgtggatcctctgtcgagcataatattgatggggactatctgcgg
ttacattccagaaaagcaacttgcttagattgctcgcatgttctcaggccaggtgctgat
gtctgtgtaaagcaagcaagttccagaggagaaacaaaatcttctgtaccattgtatcgt
gatgcaagactcatcaaaatcatgaaaaagcatcacacagaccagtgcctctgcttgttt
gctgttattttctacaaagaccagtgccctggcagcaaaggaaaagtgatacctggtaca
atagccgaggtggtgacaataggtgatgttttcatcttgcaaaagctccagtctggggag
ttccaggatcgcagcgtccattggagttctgcaaaggattgcctccatcataatagaagc
aagctgttaagtgcaagattctccacagaagttacacacctgatagttttgtctatcctg
aggggaatggaattcaacatcaaggtggtagaaggcaagatcatttatcaaattaccaaa
agagatcaagtgcggtgtagtgctgattccatgagcatacctccaggttttagcaagaac
atggatataatatcatacatgccacgtgatgaagctttacgcccaaggatcagaatggtt
ccagtcattcaggttaataaacacaaccttacagaatacgggtgtaccacagagatggat
gaattggatagtggacaagatgttgaagtcttatacgagtgtgtggacttgagacgctca
aagcgtatgaaaactcagccagaccgctttactagttatgatgcgcctaatttcaatcga
acctacaagaagaaagaggacaatacatcatctaccatgaatgaaaattcagagagtgat
ttgagttgggattcgccagttcaggaagaatcaggtaatgaagaggtgctaggaaattct
ggggtgaagcaaacagctttcagccctttcacgatcaagcaagacccaaggtccatggag
ggccagcgcaagaacccgatgaaaagatcgcagtgctcttttcctgtaaaggaaaaatca
acctctgtggaaatagaaaagaacgcaacagagcaaagatgctcagattctcacattcca
catacacctgcaaagaacaaggagaagtacagtcgtccacctttatcgtttcgactgaag
ccctttacttcatctcacagtctaggtggcaatagtgaaccagcattctgccaaaagagg
ggtaggaaaagaaagagacacatgcgtgaaagagaatacaacgaaatgatagagcaatgc
attggaaatatccagtgtgaaattgagagagattctgactttaagctagatgtccagata
atgaattgtagcggaaatgcttaccgaaaagaggattttacatggccgtcttccactgat
aatcaagaggagaaggatgagtttgaggaactgtggaaagaaatggactatgcattggcg
tcactagaacttcttgagaaaaagcagtgttatacaataacaaatttggacttccagatg
ccagattcagaagccactgatgacagcgatactgatttaggaaaaagaggagaacactgt
catcatgactgcatactggatgaacaacttggtctaacctgcagattgtgccccgttgtg
tgcactgaggctaaggatatctttccaccaatgttcactggtaaggaccatgagaggcct
ggacggagtgaattttgtcaacatgatcatgtgcttgacccttcttttcttgagatctgt
gcaccagaattctccaaatttaagggatctgggaatgtgtgggcttcgatcactgatctt
gaaccaaaactacatgctcatcaaagaaaagcatttgaatttatatggaaaaacttggca
ggatcattacatcttgaagaaatggatgatccgacagagagtcgaggtggctgtgtggtt
gcacatactccaggagcgggtaaaacactgttgctgatttcatttcttgtcagttacttg
aaagttcacccaagaagccgaccattggtccttactccaaaagctgcaatccatacgtgg
aggagagagtttgagaaatggggcatttcgcttcctttacatgtgctccactactctaac
aaaaggggcaaagcaatggggactcttagttcaaaaatgcaggcatttttgaagaacttc
cgccagccatcctggaaaatgatgcggatgatggatagtctggacaaactgtgcaagtgg
catgaggatccaagcattcttctcatgacatatcattctttcttagcgcttacaaaagaa
aactcaaaagtgcagcatcgggcattcatggcgaaagttcttatgaacaaccctgggcta
ctgatccttgatgaagggcacaacccaagaagcaacaaatcgaagttgagaaagctactg
atgaaggtgaagactgaatttagaattctcttgtccggtacagtcttccagaataacttt
gaagaatatttcaacaccttaacattggccagacctcgttttgtcaatgatgttatgatg
gagctagttccagaagcggaaagggaagcacagaaaaggactagtaaacatcaagaagca
cttgcaaggcgtatttttgtggagaaagtggggcaaaagatcgagtctagtagcatagat
gacagagtggatggcatctctgtgttaaacaagcttactcgtggattcatcgattcattt
gaagggacagaacagaacaatcttccagggattcgtgtgtatacccttttcatgaaaccc
accgacatccaggaagaggtgctggcaaaagtaacaatgcccataccaggcaatgctcgt
tacccactggaggttgagctgctcatcacaattgcttctatccatccttggcttataaaa
acaaccaagtgtgctagcacttactttaccctagaagaagtagctagagttgacaagtac
aagcggagttttgctgttgggtgcaagtcaaagtttgtaatcgatcttgtgcacaagtcc
tcattcagaggggagagagtgctgatattttgtcacaatgtgtccccgataaactttctt
gtgaagctgattgagattgtgtttggatggcgtcttggggaggaagtcctggtgttgcaa
ggtgatcaagagctccctgtgcgctcggatgtcatggataaattcaacagcgacagaaag
ggaaagaggaaggtgctgcttgcttcaacaacagcctgtgctgagggtatcagtctgata
ggtgcatcgagactggtgatgctggattcagagtggaaccattcaaagacaatgcaggca
atagcaagggcattccggcctgggcaggagagaatggtatatgtctaccttcttgtggcg
tctgggacatgggaggaagataagtacaagagcaacaggaggaaagcttggattgcaaaa
atggtcttctttgggcgttatgttgagtaccccttgcaaaaccatgtgactgaaatcgat
gatgaagttctgaaggagcttgctgatgaagatgagaccaaagctttccatatgatagtg
aagcaggactga
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