Panicum virgatum (switchgrass): 120696896
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Entry
120696896 CDS
T07260
Name
(RefSeq) transcription factor SPEECHLESS-like isoform X1
KO
K20558
transcription factor SPEECHLESS
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120696896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120696896
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120696896
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
120696896
NCBI-ProteinID:
XP_039835860
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Position
1K:complement(15292055..15296285)
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AA seq
417 aa
AA seq
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MGDGAMCELLVDDHSELRHLSGAEDLFSILETWEECVNGAGGGGGSSAAAMPAYSQSSTG
GSESAGAVEGARPTANSRRRAGDEENGVGRGAPMRKKQKGSSTAAAQDAAADEGAAKMSH
IAVERNRRKQMNEHLAVLRSLMPCFYIKRGDQASIIGLANLLAQVITCLLMMNCVQGDQA
SIIGGVVDYIKELQQVLRSLEAKKHRKAYAEQVLSPRPAVPAASPRPLLKSTPPLSPRVA
VPISPRTPTPGSPYKPSGGGGGGAASSRPPHPATAACYMMPSPAMTPTTSSSSSSYAHDQ
QQQLYPTTAQPYLPTLDSLVTELAARAAGGRPAAAGLTLPDVKVEFAGPNLVLKTVSRRA
PGQALKIIAALESLSLEILHVSVSTLDDTMVHSFTIKIGIECELSAEELVHEIQQTF
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgggggacggcgccatgtgcgagctcttggtcgacgaccacagcgagctccggcacctg
tcgggcgccgaggacctgttcagcatcctcgagacgtgggaggagtgcgtgaacggcgcc
ggcggcggcggcggttcttctgcggcggccatgccagcgtatagccagagctcgaccggt
ggttctgagtctgctggcgccgtggagggggctaggccgacggcgaacagccgacggcgc
gcgggcgatgaggagaatggcgtcggccgtggcgctccgatgcggaagaagcagaagggt
tcgtcaacggcggcggcacaggatgcggcggccgatgagggggccgcgaagatgtcgcac
atcgcggtggagcgcaaccggaggaagcagatgaacgagcacctcgccgtgctgcgctcg
ctcatgccatgcttctacatcaagaggggagaccaagcgtccatcataggactggccaac
ttacttgcacaggttattacttgcttattgatgatgaactgcgtgcagggagaccaagcg
tccatcataggaggggtggtggactacatcaaggagctgcagcaggtgctgcgctcgctg
gaggccaagaagcaccgcaaggcgtacgcggagcaggtgctcagcccgcggcccgccgtg
ccggcggcaagcccgcggccgctcctcaagtccacgccaccgctcagcccgcgcgtggcg
gtgccgataagcccccggacgccgacgcccggcagcccctacaagccgtcgggcggcggc
ggcggcggggctgcaagcagcaggcccccgcacccggccacggcggcctgctacatgatg
ccctcgccggccatgacgccgacgacgtcgtcctcgtcgtcgtcctacgcgcacgatcag
cagcagcagctctacccgacgacggcgcagccgtacctgccgaccctggacagcctcgtg
accgagctcgccgcgcgggccgccggcggcaggcccgcggcggccgggctcacgctcccc
gacgtgaaggtggagttcgccgggcccaacctggtgctgaagacggtgtcgcgccgcgcg
ccggggcaggcgctcaagatcatcgccgcgctcgagagcctctcgctcgagatcctccac
gtcagcgtcagcaccctcgacgacaccatggtgcactcattcaccatcaagattgggatc
gagtgcgagcttagcgcggaggagcttgtgcacgaaattcagcaaacgttctag
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