Panicum virgatum (switchgrass): 120704519
Help
Entry
120704519 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120704519
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120704519
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120704519
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120704519
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120704519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120704519
NCBI-ProteinID:
XP_039844877
LinkDB
All DBs
Position
4K:47161333..47166047
Genome browser
AA seq
278 aa
AA seq
DB search
MADSPRRRYSRSPSPYSRGHPKARSRSRSPARSQSRSPVPDPRSQARSRSRSHEREEEAV
NRGNTLYVTGLSSRVTEREIKDYFSKEGRVVGCHVVLEPHTRVSRGFAFVTMDTVEEADR
CIKYLNNSVMEGRNITVEKSRRGRPRTPTPGSYLGHRYERRERGRYRRGYGGGRDEYYGN
SGGGGGGYGYRRSPPPMYSYRESRDYPSYRDTRDYPPYRDYSPHRDLRDYYESRGGRGYS
PPPYGGGRSRRDRSISPYRMPERGYGGGRRAAGGGYDR
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccccgcgcaggaggtactcaaggtccccttccccttacagcagggggcac
ccaaaagcaaggtcaaggtcacggtctccagctcggtctcagtctaggtcacctgtgcct
gatcctagatctcaggcaaggtcaagatctagaagccatgagagggaggaggaggctgtt
aaccgtggaaatactttatatgtgactggactctcttctagggtgactgaaagggaaatt
aaagattatttctcgaaggaaggaagggtggttggttgccatgttgttcttgaaccccat
acacgtgtttcgcgtggatttgcctttgtcaccatggacactgtggaagaagctgaccgt
tgcatcaagtatcttaacaattctgtgatggaaggtcgaaacattacagttgaaaagtca
cgccgtggtcgcccaaggacaccaactcccggaagctatcttggccaccggtatgagcgc
agagaacgtgggagataccgccgtggctatggtggtggtcgtgatgagtattatggcaac
agcgggggcggcggcggcggctatggctaccgcaggtctccaccccccatgtattcctac
agggagagtcgggactacccttcgtacagggatactcgggactaccctccctacagggac
tactccccccacagggacctccgagattactatgagagcaggggcggtcgggggtattcc
ccgccaccgtatggcgggggcaggtcaagaagggatcgatcgatctcgccgtatcggatg
cccgagagaggctatggtggcggccgccgtgctgctggcggtggctacgacaggtaa
DBGET
integrated database retrieval system
