KEGG   Prionailurus viverrinus (fishing cat): 125168182
Entry
125168182         CDS       T09889                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
pviv  Prionailurus viverrinus (fishing cat)
Pathway
pviv03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pviv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    125168182 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pviv03400]
    125168182 (TDP1)
DNA repair and recombination proteins [BR:pviv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     125168182 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 125168182
NCBI-ProteinID: XP_047719035
LinkDB
Position
B3:129122845..129215833
AA seq 644 aa
MSQEGDYGKWTISSSDESEDEKPKLDKPSTFSLPHAGQGAANEPRYTCSEARKAAHRRKR
SPVKFSNADSISEVSPPKRQRSGSQEDLGWCLSSSDDELQPETRQKQAKNIVVKEERGIS
SPKDSAAQRPGSPTPPAHHRLEEEEEEYETSGEGQDIWDMLDKGNPFRFYLTRVSGIEPK
DNSGALHIKDILSPLFGTLLSSAQFNYCFDVDWLVKQYPPQFRKKPILLVHGDKREAKAH
LHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIW
LSPLYPRVVHGTHRSGDSTTHFKADLISYLMAYNAPSLKEWIDVIHEHDLSETNVYLIGS
TPGRFQGSQKDNWGHFRLRKLLKEHASSIPKGESWPIVGQFSSIGSMGADESKWLCSEFK
ESLVTQGKESRTPGKSGAPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHAYF
HKWSAETSGRSNAMPHIKTYMRLSPDFSQIAWFLVTSANLSKAAWGALEKNGAQLMIRSY
ELGVLFLPSAFGLDSFRVKQKFFSGSKEPTSSFPVPYDLPPELYGSKGRTQVKGKCPSFT
PKEEQCRGESRWSPSGRLALENFGNAGLRRPLCCPVWGRKSCSP
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgtctcaggaaggtgattatggaaaatggacaatatccagtagtgatgaaagtgaagac
gaaaagccaaaactagacaagccctctactttttccctccctcatgctgggcagggagca
gcaaatgagccaagatacacctgttccgaggctaggaaagctgcccatagaaggaaaaga
tcacctgtgaaattcagcaacgcagattcaatttcagaagtttcacctcccaaaaggcaa
aggagtggttcccaggaagacctaggttggtgtctctctagcagcgatgatgagctgcaa
ccagaaacccggcagaagcaggctaagaacattgtggtcaaagaggagagaggcatctct
tctcctaaagacagtgctgcccaaagacctggaagtcccacccctcctgcacaccacagg
ctcgaggaggaggaagaggagtatgaaacttcaggggaaggccaagacatttgggacatg
ttggataaagggaaccccttccgattttacctcactagagtctcgggcattgagccaaag
gataactctggagccctccacatcaaggatattttatcccctctatttgggacacttctg
tcttcagctcagtttaactactgctttgatgtggactggctcgtaaaacagtatccacca
cagttcaggaagaaaccaatcctgcttgtgcatggagataaacgagaagccaaggctcac
ttacatgcccaggccaagccttatgaaaacatttccctctgccaggcaaagttggatatt
gcatttggaacacaccacacgaaaatgatgttactgctatacgaagaaggcctccgggtt
gtcatacatacctctaacctcatccatgctgactggcatcagaagactcagggaatatgg
ttgagccccttatacccacgagttgtccacggaacccacagatctggagactcgacaaca
cattttaaagccgatcttatcagctacttaatggcttataatgctccttctctcaaggag
tggatagatgttatccacgagcatgatctctctgaaaccaatgtttatcttattggatcg
accccaggacgctttcaaggaagtcaaaaagataattggggacattttaggcttaggaag
cttctgaaagagcatgcctcgtccatacctaaaggagagtcttggccaatagtaggtcag
ttttcaagcattggctctatgggagctgatgaatcaaaatggttgtgttcggagtttaaa
gaaagcttggtgactcaggggaaggagagcaggaccccagggaaaagtggtgctcccctc
catctgatctacccttctgtggaaaatgtgcggaccagcttagaaggctatcccgctggt
ggctctcttccctatagcatccagacagctgaaaagcagaattggctccacgcctatttt
cacaaatggtcggctgagacatctggccgcagcaatgctatgccacatattaaaacttac
atgagactatctccagacttcagtcaaattgcctggttccttgtcacaagcgcgaatctg
tccaaggccgcctggggagcattagagaagaatggtgcccagctgatgatccgttcctat
gagcttggggtccttttcttgccatcagcatttggcctggacagcttcagagtaaaacag
aaattcttctcagggagcaaggagccaacatcctcctttcctgtgccatatgatcttcct
ccagaactgtatggaagtaaaggtaggacacaggtgaagggaaagtgtccgagttttaca
ccaaaagaggaacagtgccgaggagagagccgttggtctcccagtgggaggttggctttg
gaaaactttggaaacgcaggtttgaggaggcccctttgctgccctgtctggggccgcaag
agctgtagtccttga

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