Penaeus vannamei (Pacific white shrimp): 113817938
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Entry
113817938 CDS
T06111
Name
(RefSeq) LOW QUALITY PROTEIN: polyubiquitin-C
KO
K08770
ubiquitin C
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04120
Ubiquitin mediated proteolysis
pvm04137
Mitophagy - animal
pvm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113817938
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113817938
04137 Mitophagy - animal
113817938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvm04121
]
113817938
Ubiquitin system [BR:
pvm04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
113817938
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Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
113817938
NCBI-ProteinID:
XP_069977468
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Position
4:15509887..15525465
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AA seq
907 aa
AA seq
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MHDAILGAQITPAVGRLMPYGKLPRIPPQRLTQPALRYRSVEKVQEYFFVTTYCNTGSPV
SSFQVRFLVARSRRLDKRLSKRRSLHKPGRSSLWEETGPGPSRKIWLPNQAQFQSVGQIE
FCGVNFPSTVTARGYYCATITASRCRSFGKNPTGKTITLEVEPSDTIENVAKIQDKEGIP
PDQQRLIFAGKQLEDGRTXSDYNIXEDLLSLGTRLRWMQIFQNLSGKTITLGXEPSDTIE
NXKAKIQDKEGFLQINRVYFAEAVGGWSHLLDXKSRRSTLHLVLRLRGGXQIFKKKLTGN
PHTEVEPSDTXKKAKIQDKKGIPPTNSAYFAKAARKWCTLSDYNIQKESPLYLVLRLGGC
RSSKTLQGKTITLEGEPSDTIENVKAKIQDKEGFPPRPTPLSFPSSWRMVPFQTQHPKES
TLHLVLRLXGGMQIFVKTLXKTITEVEPSDTIENEKAKXQDKEGIPPDQQXFIFAGKQLE
DGPPPVHYNIQKEFPFTWFSDARWYAVFVKTLTGKPITREVEPSDXIKNVKAKIQDKEGF
PPSPTVPSLLKRXDGRTLSDYNTQKEPTLLLGPQTWGGMQFVKTLQXKTITWGFEPXDTI
KMKGPKIQDKEGIPQTNGSFFPKATEDGRTFXLQIQKESPLHLVXHGMQIFKTLTGKTIP
LEVDPSDTIENVKAKIQDKEGIPPDQQRXIFAGKQLEDGRXFSRXNIQKESPLHLVLRLL
GYADFWEALTGRPSPFEVXTPSDTIEKXKAKIQDKEGIPPDNRIFAGKQLEDGFVVVCRS
SKPPKGKTITLEVEPSDTIENVKVDAVFVRPSQERPSPWRLNPLTPLRIEGQNPGQGRYI
EKLKAKIQDKEGFPPRPAEVDLRRQAAWDTLSLTTTFRKNLPPLGPRLRVASEYSIVIPK
ISCQLRY
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgctattcttggcgcccagataaccccggcagttggcagattgatgccatat
gggaaactgcctagaatacccccccaacgcttaacccaaccagcgcttcgatacaggtcc
gtggaaaaagttcaggaatatttcttcgtcaccacatactgtaacacagggtcgccagtt
agctcatttcaagtgcgttttttggtagcgcgctccaggcgcctggataagcgcttgagc
aaaaggcgttcactccacaaaccaggtcgatcgagtctttgggaagagacaggccccggg
ccgtctcggaagatatggctcccaaaccaggcgcagttccaaagtgtaggacaaattgaa
ttttgtggcgtgaacttccccagtaccgtaacggcccggggttactattgcgctactata
accgcatcaagatgcagatcttttgggaaaaaccccacaggcaagaccatcacacttgag
gttgagccctcagataccattgaaaatgtggccaagatccaggacaaggagggcattccc
cccgatcagcagaggttgatcttcgcaggcaagcagcttgaggacggacgcactntgtcc
gactacaacatcnccgaagatttactctcccttggtactagactcaggtggatgcagatc
ttccaaaacctttcaggcaagaccatcactctggggngcgagccctcagacaccattgag
aatnttaaggccaagatccaggacaaggaaggtttcctccagatcaacagggtctatttt
gcggaagcagttgggggatggtcgcaccttttagactaaaaatccagaaggtccaccctc
caccttgtcctcagactgcgaggaggantgcagatctttaaaaaaaaacttacaggaaac
cctcacactgaggttgaaccctctgacacantaaaaaaggccaagattcaagacaaaaaa
ggcattcccccgaccaacagcgcttattttgctaaagcagctagaaaatggtgcaccctg
tccgattacaacattcagaaggagtcacccctttacttggttctcagactcggtggatgc
agatcttccaaaaccctccaagggaagaccatcactctggagggcgagccctcagacacc
attgagaatgtgaaagccaagatccaggacaaggaaggatttccccccagaccaacgccc
ttatcttttccaagcagttggaggatggtcccctttcagactcaacatccgaaggaatcc
accctccaccttgtcctcagactcnnaggaggtatgcagatctttgtgaaaacccttnca
aagaccatcacagaagttgaaccttcagacaccattgagaacgaaaaagccaaannccag
gacaaagaaggtattcccccagatcaacagnnctttatttttgcgggtaaacaactagaa
gatggtcccccccctgtccattacaacatccagaaggagttccccttcacttggttctca
gacgcgaggtggtatgcagtcttcgttaagaccctcacaggcaagcccatcacccgggag
gttgaaccttctgatnccattaaaaatgtaaaggccaagatccaagacaaggaaggcttc
ccccccagcccaacagtcccatctttgttaaagcgctaagatggccgcaccctctctgac
tacaacacccagaaggaacccacccttcttttgggccctcagacttggggtggaatgcag
tttgtcaaaaccctacagnngaagaccatcacttgggggtttgaacctnntgacaccatt
aaaatgaaaggcccaaagatccaggacaaggaaggcattccccagaccaacgggtctttt
tttccaaaagcaactgaagatggccgcactttttgattacaaatccagaaggaatccccc
cttcacttggtttagcatggtatgcagatcttcaaaaccctcacaggcaagaccatcccc
ttggaggtcgacccctcagacaccattgagaatgtgaaggccaagatccaagacaaggaa
ggcattcccccagaccaacagcgtnccatctttgctggcaagcagttggaagatggccgt
nccttttcccgttaaaacatccagaaagaatcccccctccatcttgtgctcagacttctg
gggtatgcagatttttgggaagccctcactggcagaccatccccttttgaggtttaaacc
ccctctgacaccattgagaagnggaaagccaaaattcaggataaggaaggtattccccca
gacaacaggattttcgctggaaagcagctagaagatggatttgtggtggtatgcagatct
tcgaagcccccaaagggcaagaccatcaccctggaggttgaaccctctgacaccattgag
aatgtgaaggtggatgcagtttttgtaagaccctcacaggaaagaccatcaccctggagg
ttgaaccctctgacaccattgagaattgaaggccaaaatccaggacaaggaagatacatt
gaaaaattgaaggccaaaatccaggacaaggaaggttttccccccagaccagcagaggtt
gatcttcgcaggcaagcagcttgggatacactctctctgactacaacattcagaaagaat
ctacctccacttggtcccagactcagggtggccagtgaatattccattgtgatcccaaag
atttcctgtcaactacgctattga
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