Penaeus vannamei (Pacific white shrimp): 113818715
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Entry
113818715 CDS
T06111
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03420
Nucleotide excision repair
pvm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113818715
09124 Replication and repair
03420 Nucleotide excision repair
113818715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvm04121
]
113818715
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113818715
Ubiquitin system [BR:
pvm04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
113818715
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
113818715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Motif
Other DBs
NCBI-GeneID:
113818715
NCBI-ProteinID:
XP_027226706
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MLREDFSDLPRLRHWDFKANNVNLGTIKSLDSVRLGQLSSFRYRSQLNTCLAASHILSDV
TLTQAEQIGTTFVTHADLECVDSQYLLCGLSDGGVAIYDTLSIKEGRVYAEVGSVKGGQR
GSHKYQVDCVQWYPADTGLFTTSSRDKKVKIWDPNCMKPVDQFRLECHVLHHHMSPVATK
HSLLSVGADTGEVILCDMRSGSSAHRLLGHIGPVNVIQWSPSNQYILASGGRDQTIKLWD
VRAGRAHLMDLDMENRTETPHRKKRAKRTPVAHKNRVTSLCFTTDGLWLLSFSYDNDLRL
WNSASGENMMVDYGETYTELKRPLRMSVTTNTYPDLVFIPSESKILVYEIFSGKMVNVLR
GHFSTVLGAVYNPSSMDLYSFGTDRNFITWTPKRLLTSDLPEEEEEEEEEDEEEVAEEEI
VEEVAVEERGTERRRVRSTGGMVNDCPSLDLSLPDTLPDTSPPSSVPLPHPLNSSPATSP
TAISTSPQAPANFCGRRNNGTLLLRRIQLYLFSFILRVWDWLWEYTCHYAQTEFVLNGLK
WFWDGATDECWISFITILVKWSSLSASFATLDQIHAYPHQTAIMAMTMLHPTKLISLCST
KSSKGPLKILIKISSTTVSIKILVANYEAKLCPPVIL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgctacgggaagacttcagtgatttgcccagactgagacattgggatttcaaggcaaac
aatgtcaaccttgggacaatcaagagtctggatagtgtccgccttggccagctgtcaagt
tttcggtacagatcccagctcaatacttgccttgcagccagtcacattttgtcggatgta
acgcttactcaggcagaacagattggcacaacctttgtaacacacgctgacttggagtgc
gtagattcacagtacttactctgtggtctgagtgatggtggtgttgcaatctacgacaca
ttgtccattaaagaaggaagggtttatgctgaggttgggtcagttaaaggaggccagaga
ggaagccacaagtaccaggttgactgtgtccagtggtacccagcagatacaggactcttc
acaacctccagcagagacaagaaagtgaaaatatgggaccccaattgcatgaagccggta
gaccagtttcgtttagaatgtcatgtcttgcaccaccacatgtcacctgttgcaacaaaa
cattcacttctctctgttggagctgatacaggtgaagtgatcctttgtgacatgcgcagt
ggttcatcagctcaccgcctacttgggcacattgggccagtgaatgtgattcagtggtca
cccagcaatcagtatattctagcatcaggtggaagggaccaaaccatcaagttgtgggat
gtgcgagcagggagggcccacctcatggacctagatatggagaaccgcaccgagacaccc
cataggaagaagcgagccaagaggacccctgtggctcacaagaaccgtgtcacctccctt
tgcttcaccacagatggcctatggttgctctccttcagctatgacaacgacttacgtctg
tggaactcagccagtggtgagaacatgatggtggactatggtgagacctacacagagctc
aagcggccactgcgcatgtctgtaactaccaatacctatcctgacctggtgttcattcct
tctgagagcaagattttggtgtatgagatcttctcagggaagatggtcaatgttctcagg
gggcatttctccacggtgttaggggcagtgtacaacccctcctctatggacctatatagc
tttggcactgatcgtaatttcataacgtggacacccaagaggttgttgactagtgattta
cctgaagaggaggaggaagaggaagaggaggatgaggaggaagtggcagaggaagaaata
gtggaagaagtagcggtggaggaaagaggaacagagagaaggagagtgagaagtacaggt
ggaatggtcaatgattgtccttctctggatctctccctgcctgacactcttcctgatact
tcaccaccttcctcagtccccttacctcatcccctgaattcttctccagctacttctcca
acagccatctctacctcaccccaggcacctgcaaacttctgtggcagaagaaataatggc
acactgctattaaggaggatccagttgtatctcttcagttttatccttagagtttgggat
tggctgtgggagtacacatgccattatgcacagactgaatttgtgctgaatggtctgaaa
tggttctgggatggtgctacagatgagtgttggatatccttcatcaccatcctagtcaag
tggtccagtctctctgcaagttttgcaacactggaccaaatccatgcctacccgcatcaa
actgcaatcatggccatgacaatgctacacccaacaaaacttatctcactctgcagtact
aaaagcagcaagggaccacttaagatacttataaagataagtagcactactgtctcaatt
aagatcctagttgccaactacgaagctaagctctgcccaccagtcatcctctag
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