Phaseolus vulgaris (common bean): 137807570
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Entry
137807570 CDS
T03093
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137807570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137807570
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137807570
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
Coatomer_E
TPR_11
TPR_19
TPR_8
ARM_TT21_N
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
137807570
NCBI-ProteinID:
XP_068464382
LinkDB
All DBs
Position
3:39031325..39038180
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AA seq
859 aa
AA seq
DB search
MESRDLSSSSPSSTANRDASSGTETEDGVFTVAVALAKDAALHFQSGKFAECVEVLNQLL
QKKQDDPKVLHNIAIAEFFRDCCSDPKRLLEVINGVKRKNDELALALGEQGESVNNVGNK
SVLGSKGSSASAHQFSGPNITGTMYSDEFDSSVAMLNIAIIWFHLYDYAKALSVLEPLFQ
NIEPIDEQTTALHICLLLLDASLACHDASKSADVLTYLEKAFGVSSVSQGDSGNTAQQQA
ANLVTKSAAVAISASAADVSSSDLGSSANASENHLSRALSEDTLDYEAMILDMGGQNLAR
PMGPSSNDISRALVDRFSTVDLKLKLQLYKVRFLLLTRNLKLAKREVKLAMNIARGRDSS
MALLLKSQLEYARGNHRKAVKLLMASNNRTDTAFSSIFNNNLGCIYYQLGKYQTSSLFFS
KALTNCSSLRKDQSLKLPTFSQDNSLLIIYNCGVQYLACGKPILAARCFQKASLVFYKQP
LLWLRLSECCLMALEKGLIKSSRVPSEKLGLVVRVVGIGKWRQLVVEDQIPGKGHLDSSE
GGDCSSEDGRLKLSMSLAQQCLLNALNLLDSNNANCLKSGLPSNSSVEENDGSEVSPSKN
SNLKNLHGVDSKAFSVGVGLGQVNANGDTKEQKGGNSQELVQNSLSYYENVRKRENQLVK
QAVLANLAYVELELDNPVKALSVARSLLELPECSRIYIFLGHVYAAEALCLLNRPKEAAE
HLSFYLSGGSNVDLPFSLDDCEKWQPERTAEFEEVNVGSVAANNSSLEGAQSIVFLKPEE
ARATIYANFAVMSAMQGEFEKSSILITQALSILPNSPEATITAVYLDLLLGKPQEALTKL
KRCSRIRFLPSGITLNKSS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccgagatttatcgtcgtcatccccgtcgtccaccgccaaccgcgacgcctca
tccggcaccgagaccgaggacggtgttttcaccgtcgccgtggcactcgccaaagatgct
gcgttgcatttccagtctggcaagttcgccgagtgcgtcgaggtgttgaaccagctcctg
cagaagaagcaggacgatcccaaggtacttcataatattgcaattgcggaattcttccga
gactgttgttcagatcccaaaaggttgcttgaagtaataaatggtgtcaagagaaaaaat
gatgagcttgctctggctttgggagaacaaggggagtcagttaacaatgttggaaataaa
agtgttttggggtccaaaggaagtagtgcttcagcacatcagttttcaggtccaaacatc
actggcaccatgtattcagatgaatttgactcttctgtggcaatgctaaacattgctatc
atttggttccatctctatgactatgctaaggcattgtctgtgttggaacctctttttcaa
aatattgaacccatagatgagcagacaacggctctacatatttgtcttctgctgcttgat
gctagccttgcttgccatgatgcatcaaaatcagctgatgtgttgacttatctggaaaaa
gcatttggtgttagtagtgtgagtcaaggtgatagtgggaacacagcacagcaacaagct
gcaaatttagttacaaagtctgcagctgttgccattagtgcatcagctgctgatgtttcc
agttctgacttggggtcaagtgcaaatgcatctgaaaatcatctatccagagctttatct
gaagatacacttgattatgaagccatgattttggatatgggcggacaaaatttagcaagg
ccaatgggcccatcttcaaatgacatttcaagggccttggttgacaggttttccactgtt
gatttaaagcttaaattgcaactttacaaggttaggtttctgcttcttactaggaatttg
aagctggcaaaacgagaagtcaagctggccatgaacattgcacgtggaagagattcatca
atggctcttcttttgaaatcccagcttgaatacgcccgtggaaaccaccgcaaagctgtg
aagctattgatggcatcaaataatcgaactgacacagcattttcaagcattttcaacaac
aatcttggttgcatttattatcagcttgggaaatatcagacgtcttctttattcttctca
aaggcattaaccaattgttcatcactgcggaaggatcaatcactaaagctacccactttc
tcacaggacaattctctccttataatttataattgtggtgtgcagtatttagcttgcggg
aagccaatacttgctgctcgatgtttccagaaggcaagtctggtcttttacaaacaacct
ctcttgtggctcagattgtcagagtgctgtttgatggctttagaaaagggccttatcaaa
tcaagtcgggtcccatcagagaagttggggttggtagtgcgtgttgttggaataggaaaa
tggaggcaacttgtggtggaagatcagattccaggaaagggacatttggactcatctgaa
gggggtgattgttcaagtgaagatgggcgactgaagttatcgatgtcccttgcgcagcag
tgcctcttgaatgctctaaacttgctggattccaacaatgcaaattgtttgaagtctggt
ttgccatctaattcttctgtggaggaaaacgatggaagtgaagtgtcaccttcaaagaat
tcaaatcttaaaaacttacatggtgttgattcaaaggcattttcagtaggagtaggttta
ggtcaggtcaatgcaaatggggacactaaagaacaaaagggaggaaatagtcaggaactt
gttcagaactccctatcctattatgaaaatgtccggaaaagagaaaatcaattggttaaa
caagccgttcttgctaatttagcatatgtggagctggaattggacaatcctgtgaaggca
ctatcagttgcaagatctctcttagaacttccagaatgttccagaatttacatctttcta
ggtcatgtttatgcagcagaggcactctgcttgttgaacagaccaaaggaagcggctgag
cacttgtcattttatttgtctgggggaagcaatgttgacttgcctttcagccttgacgac
tgtgagaaatggcaaccagagaggactgccgaatttgaagaggtgaatgtaggatccgtt
gctgccaacaattcttctcttgaaggtgctcagagtattgttttcctcaagccagaggag
gcgcgggcaacaatttatgcaaattttgctgtaatgtccgcaatgcagggtgagtttgag
aaatccagtattttgattacacaggcattgtccatattacccaacagtccagaagccaca
attactgcagtttatttggatcttttgctcggtaagccacaggaagctctgaccaaatta
aaacgttgtagccgtattaggttccttcctagtggaataacattgaataaatcttcttga
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