Phaseolus vulgaris (common bean): 137819672
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Entry
137819672 CDS
T03093
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137819672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137819672
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137819672
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137819672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
137819672
NCBI-ProteinID:
XP_068479679
LinkDB
All DBs
Position
10:8916723..8938529
Genome browser
AA seq
2413 aa
AA seq
DB search
MKTLLHSLPSMSNFSSNQIRFLLTTLNEVNFDSVFHQLSQFAEFGTTGCILLLQTCLDHY
GYARRDTKDMQHEPILGAVIKYLLDKPNFSTVFSESMKNMEINESFLEIFCNGLQLSLLE
KMVISLALSDSENPDVRLCGKNFCMSQIEELCANPGSMSFHEQIHSIIMFLKQSEGLSKH
VDSFMQILSLVEFKDTPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEM
NMGDIVKELGYGCTVDVSQCKDIFSLFLPLTEHTLSKLLGAIACTHTGLEDNQNTYLNFR
AAHGYNVSELPPLNSWNIDVLIDTVKHLAPHTNWVRVIENLDHEGFFLPSEEAFSFLMSV
YKHACKEPFPLHAICGSVWKNTEGQLSLLKYAVSAAPEMFTFSHSGRQLVYADAINGHKL
QNGHPNHSWLCLDLLDVLCQLAEKGHASVVRSILDYPLKHCPEVLLLGMAHINTAYNLLQ
QEVSLIVFPMIVKSAVGSGMILHLWHVNPNLVFRGIIDSQNHDSDSIIRIVDICQELKIL
SSVVEVIPSHYSIRLAAVASRKELLDFEKWLSSNLITYKETFFEECLKFLKDAHFGGSQN
LSGQSFHPSSAVLSLYAETTATVLKVLKSHNDLVAPRHLSEELERLHISIIDSNPRIQNG
GAADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFDCMIA
NLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLF
GSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDGDGASHAS
VISNHHSAPATLGHVEQLSGPTVIQPGQQHLSLQLQQRRENLLDDRHKASVGSSTDVKPQ
LSSLGQSSVLTPTDASNTNKLHSSVSTSSMLSSSPGFVRPSRVPTSTRFGSALNIETLVA
AAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKSKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMG
ILGLLVEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDV
GASQSQMITDIKSGLVPPVNQVELPLEVTNQSNTGAHPHMLSQYAGPLHMSSGALMEDEK
VTPLGLSDQLPSAQGLLQATPAQAPFSISQLPTQIPNIGTHVIINQKLSGFGLQMHFQRA
VPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSL
AHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAIN
TIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDF
VRLPWQNQSSQSSHSMSAGVAGQSGNTGLPSTNGSVSGQVNPGYPVSTGYEGVSRPLEDM
TESNLAQHFSASSIHIRASDSASQLSLEKESVASFPSAASTPELHAVDSSDVKESGTSSQ
TLVTSGAMERLGSSFLEPSLTTRDALDKFQIVAHKLEAMVSNDSRDAEIQGVISEVPEII
LRCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSE
EERKYNKETTIGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVIS
ELHNLVDALAKLATKPGCPEPLPQLLEMIKNPGALTSGNAGKEDKARQSRDIKVPGLLPA
NREEFNSVDSIEPDPAGFREQVSILFTEWYRICELPGANDTVSAHFILQLHQNGLLKGDD
LTDRFFRLLLELAVAHCLSTEMINSGSLQSQQLQTMSFLAVDIYAKLVFSILKGSNKPFL
LSKILAVAVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANA
FHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAE
LGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLP
DPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDDYLKVRPSLLELTRQQSSPFL
SELKDKMLLAPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHAQSSANAFPLAVF
SVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQE
QITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGG
PKPVDDNMVSGWV
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcttcttcattccttgccatccatgtccaacttttcctccaaccagattcgc
tttctcctcaccaccttgaacgaagtcaactttgactccgttttccatcaactctctcag
tttgctgaatttggaaccactggatgcattttgctgcttcaaacttgcttggatcactat
ggttatgccagaagagatacgaaagacatgcagcatgagccaattcttggggcagtcatt
aaatacctcttggacaaaccaaacttcagcacagtgttttctgagtccatgaagaatatg
gaaattaatgaaagctttctagaaattttttgtaatggattgcagttatctttattggaa
aagatggtcatcagtcttgctttatctgattctgagaatcctgatgtcaggctgtgtgga
aaaaacttttgcatgtctcagattgaggaattgtgtgccaaccctggttctatgagtttt
catgagcaaattcacagtattatcatgttcctaaagcagtccgagggtctttccaagcac
gtggattcctttatgcagatattatcacttgtggagttcaaagacacaccacctttcgtc
ttgactccattgcttcctgatgagatgcatgaggctgattttttaaggaatatggagttg
ttccacgactctggagaaaatgattttgatgctattttggcagacatacagaaggaaatg
aacatgggtgatattgtgaaggagctaggctatggatgcactgttgatgtttcacagtgc
aaggatatattttcactcttcttacctttaactgaacatacactctctaaattacttggt
gctattgcttgtacccatactgggttggaggacaaccaaaacacatacttaaattttcgt
gcggcccatggatacaacgtgtctgagttgccgccgctgaactcttggaatattgatgtc
ttgattgatacagtcaagcatcttgcacctcataccaattgggtacgtgttattgaaaat
cttgatcatgaagggttttttcttcctagtgaagaggcattctcttttctcatgtccgta
tataaacatgcctgtaaggaaccgtttcctctccatgccatctgtgggtctgtctggaag
aatactgagggtcagttgtcgctccttaaatatgctgtatcagcagcaccggaaatgttt
accttttcacactctggaagacagctggtatatgctgatgcaattaatggccacaaactt
caaaatggacatcccaatcattcatggctgtgtcttgaccttttagatgtcctctgccag
ctagctgaaaaaggtcatgccagtgttgttcgatcaatccttgattatccccttaagcac
tgtcctgaagtcttgcttcttgggatggcacacattaatacggcctacaatctcttgcag
caggaagtatctctaattgtttttcccatgattgtaaaaagtgctgtaggcagtgggatg
attctacacctttggcatgtaaatcctaacttggtctttagagggataattgattctcaa
aaccatgactcagacagtattataagaattgtggacatctgccaggagctaaagatttta
tcatctgtggtggaagttattccttctcattatagtataaggttagcagctgttgcatca
agaaaagaattacttgactttgagaagtggttgagtagcaacttaattacatacaaggaa
accttttttgaggagtgtctcaagttcttgaaggatgcccattttggtggatcacagaac
ctttctggccaatcttttcatccatctagtgctgttctgagtctatatgctgagacaact
gctactgtcttgaaggttcttaaatctcataatgacttggttgcccctagacatctttct
gaggagttggagaggctgcatatatctattatagattcaaatccaaggattcagaatggt
ggagcagctgattcatctacttctgatggatatgcggatgacattgaagcagaagcaaac
tcttacttccatcaaatgttctctgatcagttaaccattaatgcaatggtacaaatgctt
gctagattcaaggaatcttcagtgaagagggagaaatcgatttttgattgcatgattgca
aacttattcgaggagtatagattttttccaaagtatcctgaaaggcaactcaaaatagct
gcagttctctttggttctgtgatcaagcatcagcttgtaactcatctgtctttggggatt
gcactgcgttatgttcttgatgcattgcgcaagcctgcagattcaaaaatgtttttgttt
ggaagtctggcattggagcagtttgtggatcgtctaattgagtggcctcagtattgcaat
catattcttcaaatttcccatttgcgcagtacacattcagaaatagttgctttcattgag
caggcccttgctaggatttcttctggtcattcggatggtgatggggcaagtcatgcttct
gttattagtaaccatcattctgcaccggctacattagggcatgtagagcagctcagtggc
cccacagtcatacaacctgggcagcaacatttgtcactgcagcttcaacagagacgtgaa
aatctcttggatgatcgtcacaaagcttctgttggttcatctactgatgtcaaaccacag
ttatcttctctagggcaatcttcagtactaacacctactgatgcttctaataccaataag
ttgcatagctcagtcagcacctcgtcaatgctatcttcttctcctggttttgtccgccct
tcccgtgtccctacttctaccaggtttggatctgccttgaacattgaaactttggttgct
gctgctgagaaaagagaaattcctattgaggctccagggtcagaagttcaggacaagata
ttatttataattaataatgtttctgctgctaatattgaagctaaatcaaaagagttcact
gaaattttgaaagaacagtactatccttggtttgcgcagtatatggttatgaaaagagca
agcattgaaccaaatttccatgacctgtacctgaaattcctggacaaagttaattcaaag
gctttgaacaaagagattgttcaggcaacttatgaaaattgcaaggttcttttaggatct
gaactcataaaatcaagttcagaggaacgctctttgcttaaaaatttggggagctggctt
ggaaagttaacaattggccggaatcaggttttgagggctcgtgaaatagacccaaagtct
ttgattatggaggcatatgagaaggggctaatgattgctgttattccatttacatcaaag
gtccttgaaccatgccaaagcagtcttgcataccaacctcctaatccttggactatgggc
attttgggattgcttgttgaaatttattcaatgccaaacttgaaaatgaacctcaagttt
gacatagaggttttattcaaaaatcttggtgttgatatgaaggatgtcaccccaacttct
ctcctgaaggatcgaaaaagagaatttgaaggaaatcctgatttctctaataaagatgtt
ggagcatctcaatcacaaatgattactgacataaaatctggtcttgtacctccagtaaat
caagtggaattgccacttgaagtcaccaatcaatcaaatacgggtgctcatccacatatg
ctgtctcagtatgctggtcctcttcatatgtcttcgggtgcattgatggaagatgaaaag
gtaacacctttgggattgtctgatcaacttccctctgctcaagggctgttacaagctact
cctgcccaagcaccgttttctattagccagcttccaacacagatacctaacattgggact
cacgttattattaatcaaaagctcagtggttttggtttgcaaatgcattttcagagagcg
gtacccattgcaatggatagagctatcaaagagatagtgtctagtattgtgcagcgtagt
gtttccatagcaacacaaactacaaaggagcttgttttaaaggattatgccatggaatct
gatgagacacgcatattaaatgcagcacacttaatggtcgcaagtcttgctgggagtttg
gctcatgttacttgcaaagagccattacgggcatcgatctctggtcaattgaggacttca
ctgcagaacctaaatattgctaatgaaattttggaacaagctgtgcaacttgtcaccaat
gataatcttgatctaggctgtgctgtcattgaacaggctgctactgataaggcaataaac
accatcgatacagagattggtcaacaactctctttgagaaggaagcatcgagaaggtatg
ggttctacattttttgatgcaaatttgtatccacaaggttctatgggtggtgttccagag
cctcttcgccctaagcctggccagttgtcactgtcacaacagcgtgtatatgaggacttt
gttcggcttccatggcaaaaccagtctagccagagctcacattctatgtctgctggtgtt
gctggtcaatctggcaatactggtcttcctagcacgaatggttctgtctctggtcaggtt
aaccctggttaccctgtgagtacaggatatgaaggagtatctcgaccattagaagatatg
acagagtctaacttggctcaacattttagtgcttcctcaattcacattagagcatctgat
agtgcttcccagctaagtttggagaaagagtctgttgcctcatttccttcagctgcttcc
acgcctgagttgcatgcagtggattcgtctgatgtgaaagaatctggaacttcttcacag
acactagtcacatcaggtgctatggagcgccttggaagtagtttcttggagccttctctc
acaacaagagatgccctagataaattccaaattgttgcacataagttggaagctatggtc
agcaatgattccagggatgcagaaatccagggtgtcatctctgaggttccagagatcata
cttagatgtgttagtcgagatgaggcagctttagcagtggctcaaaaggttttcaagggt
ttatacgataatgcatcaaacaacatccatgtctctgctcatcttgcaatcttgactgcc
attcgtgatgtttgcaagcttgctgtgaaggagcttactagttgggtaatttactcagaa
gaagaaaggaaatataacaaagaaactactattggcctcatccgtagtgaattgctaaat
cttactgagtacaatgttcatatggcaaaacttattgatggaggaaggaacaaggctgca
acggaattttccatttcccttcttcaaaccctggttatcgaggaacctaaagttatttca
gaacttcacaatcttgttgatgctttggctaagcttgctacaaaacctggatgccctgag
ccattaccacaacttcttgaaatgatcaagaatcctggtgctctaacctctggcaatgct
ggaaaagaggacaaggcaagacaatcaagagacattaaggttcctggtctgctacctgcg
aacagggaagagttcaacagcgtggattctattgaaccagatccagctgggttccgggag
caggtttccattttgtttacagaatggtataggatatgtgaacttcctggcgccaatgat
acagtctccgcccacttcatcttgcaattgcatcagaatggcctgctgaagggggatgat
cttacagatcgattcttccgcctattactggagcttgcggttgcacattgcttatccact
gaaatgattaattcagggtcactacaatcccaacagctgcagacaatgtcatttcttgca
gttgatatttatgcaaagcttgtcttctcaatcttgaagggatcaaacaaaccctttctt
ctttccaagattctggcagttgctgtcagattcattataaaagatgcagaggagaagaaa
gcatcttttaatccaagaccacttttcagattattcatcaactggcttctagatcttggt
tcccttgagcctgttactgacggtgcaaatcttcagattttgactgcttttgccaatgca
tttcatgcattgcagccgcttaaagttcctgcgttcagttttgcatggcttgagctgata
agtcacaggagcttcatgcctaaaatgttgactggtaatggtcaaaagggttggccttat
atccaacggttacttgtagacctgttccaatttatggagccctttctgaggcatgctgaa
ctgggagacccggtccgtgtcctctacaaagggacacttagggtgctcttagtgctactt
catgacttccccgagtttctatgtgactatcactttaccttttgtgatgttatacctcca
agttgcatacagatgaggaatatcattctaagtgcatttccacgtagtatgagactgccc
gatccatctactcctaatttgaagattgatttacttcaagaaattacccaatcaccccgc
attctttctgaggttgatgctgcacttaaagcaaagcagatgaaggctgatgtagatgac
tacctcaaggtccgcccttccctcctcgaattgacaaggcaacaaagttctccatttttg
tccgaactgaaggataagatgcttctcgcacccaatgaagctgcctctgctggtactcga
tacaatgtgccattaatcaactcacttgtgctatatgttggaatgcaggcaatccatcag
cttcagggaagaactccccatgcacaatcttcagcaaatgctttccccttggccgtattt
tctgttggtgctgctttggatattttccagacactcatcgtggacttggacaccgaaggc
cgctacctttttctaaatgccattgccaaccaactgcgttatcctaataccaacacacac
tacttttctttcatccttctttacttgtttgctgaatcaaaccaggaagttatccaagaa
caaattactagagtcttgttggaacgcctaattgttaaccgtcctcatccctggggcctc
ctcattacctttattgaacttatcaagaatcctaggtataacttctggaaccggagtttc
atcagatgtgccccagagatcgaaaagctttttgaatctgtgtcaagatcttgtggaggt
ccaaaaccagtggatgacaacatggtgtctggttgggtctga
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integrated database retrieval system
