Phaseolus vulgaris (common bean): 137834567
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Entry
137834567 CDS
T03093
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03013
Nucleocytoplasmic transport
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137834567
03015 mRNA surveillance pathway
137834567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137834567
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137834567
mRNA cycle factors
P-body specific factors
137834567
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
NiFe-hyd_HybE
Motif
Other DBs
NCBI-GeneID:
137834567
NCBI-ProteinID:
XP_068498690
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Position
5:complement(75955..85025)
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AA seq
566 aa
AA seq
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MMEERKMKVRSEREKTKVVIRHLPPSLTQSDLFQHIDSHFDSRYNWFSFRPGNTSLKRQR
HSRAYIDFNSPHDVFDFAHFFHGHVFVNERGAQHKAIVEYAPSQRVPKPTTKKDGREGTI
YKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAVDTG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAARKESKDKSAFIVVP
RREDLSAESSMKGISEIEALHGIEGPISGIPLSSDSGKKKILLLKGKQREIPSATEGTVK
QQIVQSGNSPISTPAKQNQRRENSGRLIRSILLNNESRQSQSITGTQHKIQILSSENGKR
PPRSFGSRSGLNDQHPNHDIAQVNSDGDSKRALDEKFVKRDPHGLGSGEKTEKRTRNKDR
PDRGVWTPLRRSDVSHAGSDYSSSSMAQPTLSNPESAEGELKENVTSGNRGSEFSASAGG
RGNPSIENGSQRNFARRGASYVVKDDGAVSISEGKPSKKSVGHSAHEVYMSYVDLFWIVY
FVDSSCVRYLLCLQKQVWVQKSSSGS
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaaaggaagatgaaggttcgttccgaaagggagaagacgaaagtggtgatt
aggcatttgcctccttctctcactcaatccgatctcttccaacacatcgactcacacttc
gattcacgctacaattggttctctttcagacccggcaacaccagcctcaagcgtcagagg
cattcccgagcctatatagacttcaattctcctcatgatgtgttcgactttgctcacttc
ttccatggacatgtttttgttaacgagagaggtgctcaacataaagctattgttgagtac
gccccttcccagcgtgttccgaagcctactaccaagaaggatggacgtgaagggaccata
tacaaagatcctgactatctggagttcctcaaactcattgcaaagccacatgaacatctt
cccagtgcagagatacaattggaaagaaaagaagctgaacaagctggggctaacaaggaa
acacctattgtcacacccttgatggaatatgttcgacagaaacgagctgttgacactggt
atgcaggcttcctcagcagtggcaaaagttagcagaagatccagagcggctttgcctggc
aagcctggctcaggcaatactaaacgaggatctgaaaagaaaaagtatgttcagaaggac
aatgccaagagtgctgctcgcaaagagtcaaaagataaatcagcctttattgtggttccc
cggcgagaggatctatcagctgaatcaagtatgaaaggaatttctgaaattgaagcattg
catggcattgaaggtcccatttctggaattccactgtcttctgactcaggaaagaaaaaa
atccttcttctgaaagggaaacagcgggaaattcccagtgccactgagggtacagtaaaa
cagcaaatcgtacaatctggaaattctcccatttcaactcctgcgaaacagaaccagaga
cgtgaaaatagtggaagattgatcaggagcatacttctaaataatgaatctcgtcaaagt
cagtctattactgggacacaacataaaattcaaattttaagctcagagaatgggaagaga
ccacctcgttcttttggctcaaggtctgggttaaatgatcaacatccaaatcatgatatt
gcacaagttaattctgacggggattctaaaagggctttggatgaaaaattcgtaaaaagg
gatcctcatggtttaggtagcggtgagaaaacagaaaagcgtactagaaacaaggataga
cctgatcgtggtgtttggacaccccttcgtcgttctgatgtttcacatgctggtagtgac
tactcgtcatcctcaatggcacaacctactctgtcaaatcctgaatctgctgaaggagaa
ctaaaagaaaatgttacttctgggaacaggggcagtgaattctctgcttctgcaggtgga
agaggcaatccttctattgagaatggttcccaaagaaattttgcacgccgtggagcttcc
tatgtagtgaaggatgatggtgcagtcagtataagtgaagggaaaccttccaagaaaagt
gttgggcacagtgctcatgaggtatacatgtcatatgttgatctattttggattgtctat
tttgttgattcatcgtgtgtaaggtacttattatgtctgcagaagcaagtctgggttcag
aaatcttcttcagggtcttaa
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