Plasmodium vinckei vinckei: PVVCY_1102050
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Entry
PVVCY_1102050 CDS
T08061
Name
(RefSeq) cleavage stimulation factor subunit 1, putative
KO
K14406
cleavage stimulation factor subunit 1
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PVVCY_1102050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_1102050
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
PVVCY_1102050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR75_1st
Phage_HP1_Orf24
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
19960718
NCBI-ProteinID:
XP_008624390
UniProt:
A0A449BV92
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Position
PVVCY_11:718789..720411
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AA seq
540 aa
AA seq
DB search
MKGFLAKNFLSSNNTDNKDGSDENEDKSEIDKNDNEENNENNKSNEINEENNNDKCDPSM
NEQNYTTNDKIENDDINNDNNEVENNEYKKKDNVFSSIDKMTFYECVLKQLADDNLVDSY
NTLKREINLEENANSENNFLFNLYQKRLYNNSSNVVETEETNINKLTEYNSLNKKKTHIY
NNNLILNYENNSNNIRQTYSYEINSRIELIHKNKCICCANNSSRNILCSASSDSTIKMIK
INDLKKKKIFLIDNKHTKKINSLKFHPIKNILFSASDDCKIHIIDINKALKKKKKLYYNQ
YKHMKDKNKKNDEEKNIIIQDKNPFISMYVHPCGDFLYACNKNENIIKLYDLQTLNCFMT
TNKSTYHSSTINQISGTSDGHIYGSVSVDGNIKIWDGLNSNLIHTQYNAHNGYSIQSIEF
NKSNFYILTSGLDGQTKIMDMRNFKTLYTFGNGLSCISNKSIFMNNEGFIANIVQANDIF
DSQFYIYNSYFGNIEHNIQNVHNDKINDIINARDGLDVHTASYDGFCKTIKINQMYSHDN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggatttttagcgaagaattttctttcatcaaataatacagataacaaagatggg
agtgatgaaaatgaggacaagagtgaaatagataaaaatgacaatgaagagaataatgaa
aataataagtcaaacgaaataaatgaagaaaacaataatgataagtgtgatccttcaatg
aatgaacaaaattatacaactaatgacaaaattgaaaatgatgatattaacaacgataat
aatgaggttgaaaataatgagtataaaaaaaaagataatgtattttcaagtattgataaa
atgacattttatgaatgtgtattaaaacagctagctgatgataacttagttgattcatat
aatactttaaaaagagaaataaatttagaagaaaatgcaaatagtgaaaataatttcctt
tttaatttgtatcaaaaaaggttatataataattcatcgaatgtagtagagacagaagaa
acaaacataaataaattaacagaatataattctttaaataaaaaaaaaacacatatatat
aataataatttaatactaaactatgaaaataatagcaacaacatacgacaaacatactct
tacgaaattaatagtcgtatagaactcattcataaaaataaatgtatatgttgtgctaac
aactcatcgagaaatattctttgttccgctagttcagatagtaccataaaaatgataaaa
ataaatgatttaaaaaaaaaaaaaatatttcttatagataataaacacacaaaaaaaata
aatagtctaaaatttcatccaataaaaaatattttattttcagctagcgatgattgtaaa
atacatattattgatataaataaagctttgaaaaaaaaaaaaaaattatattacaaccaa
tataaacatatgaaagacaaaaataagaaaaatgatgaagagaaaaatataatcattcag
gataaaaatccatttatatcaatgtatgtgcacccatgtggtgatttcttatatgcatgt
aataaaaatgaaaatataataaaattatatgaccttcaaaccttaaattgttttatgaca
actaataaaagtacatatcatagttcaactattaatcagattagtggaacttctgatggg
catatatatgggtcagtttctgttgatggaaatataaaaatatgggatgggcttaattca
aatttaatacatactcaatataatgcacacaatggatattcaatacaatctattgaattt
aataaatcaaatttttatatattaacatccggtttagatggccaaacaaaaataatggat
atgagaaattttaagacattatatacatttggaaatggactatcatgtatatcaaataaa
agtatttttatgaataatgaaggttttatagctaatattgttcaagctaatgatattttt
gattcacaattttatatatacaattcctattttggtaatatagaacataatatacaaaat
gtacataatgataaaattaatgatattataaatgcaagagatggattggatgttcataca
gctagctatgatggattttgtaaaactatcaaaataaatcaaatgtattcccatgataat
taa
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